Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1222 ATGGAAGAAATAGTTGCATCTTCTGATAAAGAGAAAACAAATGAAGGAAACAGAAACTGTAATAGTAATAATGATAATTTAGCTGCAACTGTTGCATGTGAAGATGAAGAACCTAGAACTGGGATGACATTTAGTTCTGAAGAAGAAGTTACTAGGTATTATATGAATTATGCCAAAAATATTGGTTTCGGAGTTGGAAAAATAAGTTCGAAAAACGGAGATGATGGAAAGAAATATTTTACTTTAGCTTGTAATTGTTCGAGAAGGTACGTTAGTACTTCGAAGAATCCTTCGAAGCAATATCTTACTTCGAAAACACAATGTCGGGCTAGGTTGAATGCATGTATGGCTTTAGATGGAACAATTACTGTTTCAAGAGTTGTTTTGGAACATAATCATGAACTTGGCTTTGCCAAAGGACGGTATTTTAGATTGGATGAGAGTTTGGGGCCTCCTCGTTTAGAACTTAATGATCAAGTTGCGAATAGTGTTGGCAAAAATCTTCAGTCTGTGGCTGTTGAAACAAATGGGTTTGAGAATCTTACTCTTGGAGAAAAAGATTGTAGAAACCATGTACCCAAAGTAAGGCGGCTAAGACTTGGGAGAGGAGATGTTGATGCAATTCATAGCTTTTTTCATAGAATGCAAAAGCAAAATAGTCAATTTTATTGCGCAATGGATATGGATGACAAAGGGATTATACAAAATTTATTTTGGGCAGATGCGAGGAGTAGGGCTGCATATGAATATTTTGGTGAAGTTATAACTTTTGACACCACTTATTCAATAGATAAATATGACTTGCCATTGACCCCTTTTGTTGGAGTGAACCATCATGGCCAGTCTATTTTGTTAGGGTGTGCAATATTGTCGAACATGGATACTAAAACTCTTACTTGGTTGTTCACAAGATTGTTAGAATGTATGCATGGACATGCTCCAAATGGCATAATTACTAATGAGGATAGCGCGATGAAAAGCGCAATTCAGGATGTCTTTCCGAAAGCTCGTCATCTATGGTGCTTGTGGCATATAATGAAAAAGGTTCCAGAAATCTTGGGTAAACACTCTTGTTATGAGTCTATCAAAACACTTTTGGATGGTGTGGTATATGACTCTTTGAGCAAAAGTGATTTCACAGAGAGGTGGGGAAATATGGTTGAACATTATAAACTGCATGACAATGAATGGTTAAAAGGGTTATTTGATGAGCGACATCGTTGGGTTCCTGTGTATGTGAAAGAAACATTTTGGGCTGGAATGTCGACTACACAAAGGAGTGAAAGTATAGACTCGTATTTTGATGGGTATGTAAACTCAAAGACAACATTGAAGCTATTTGTTGAACAGTATGACACTGCATTGAATGATAAAATCGAAAAGGAAAGCATGGCTGATTTTGATTCATTTAACACAACAATTGCTTGTGTAAGTCATTTTGGCTTTGAGATCCAATTCCAGAAGGCATTTACCAATGCAAAATTCATAGAATTTCAAGTAGAGGTTTCTTCTATGATGTATTGTAATACTAGCTTTGAGAGATTGGAGGACTCAAATTCAATATTCTCTGTTACTGAAAATAAGAAAGTAAATGAGAAAATTAAGGATGTGGTGTTTAAGGTATCTTTCAATGAAAAAGACTTCAAATTGCGGTGCACATGTTGCTTATTTGAGTTTAAAGGAATTTTATGCAGACACATTCTTTGTGTGCTTAAGCTCGTTGGCAAAACAGATTCGGTGCCGCCTTATTATATTTTTCCACGGTGGATGAAGTATGTAAAGCGGAGATATACACTGATTAAACGTGGTTTTGAAGAATTGCAACGTGTTAATATAGCATGTGATGCCTTTTATGAAGTTGCTTCTACAATGATAAATTCTGAAGATGATTTATTGAAAGTGCTGAATTTGATCAAGGACTTGAAAAATGTGTTGACTTGTAAAGAACCCTCCTCTAGAAGTGCACATGAACTTAGTTCAGTTCCAAACCATGTAACTAGGATGCTTGATCCGACAGTAACTCAAAGTAATGGGTGTCCTCCTTTGAAAAGGAAAACATCTAATATTGATCAAATTTTGAAGAAGAAGCTTGCAAGAAACAAACAAAAGAACAACCAGGAAAATAAAAATGATCAATGTCAAGAAGAGGGCTTATTATGTACACCTATTGTTCAAGAAATTGATAATGAAGAACATCTTGGTGATGCCAGCCAGGTTCTATATTGTCCTCAAATCAGAAACCAGAATGTTTCCTGTTCTGAACTTTTACAGGCACAACACCACATGAATGATCCATCATCATAA 2304 0.3585 MEEIVASSDKEKTNEGNRNCNSNNDNLAATVACEDEEPRTGMTFSSEEEVTRYYMNYAKNIGFGVGKISSKNGDDGKKYFTLACNCSRRYVSTSKNPSKQYLTSKTQCRARLNACMALDGTITVSRVVLEHNHELGFAKGRYFRLDESLGPPRLELNDQVANSVGKNLQSVAVETNGFENLTLGEKDCRNHVPKVRRLRLGRGDVDAIHSFFHRMQKQNSQFYCAMDMDDKGIIQNLFWADARSRAAYEYFGEVITFDTTYSIDKYDLPLTPFVGVNHHGQSILLGCAILSNMDTKTLTWLFTRLLECMHGHAPNGIITNEDSAMKSAIQDVFPKARHLWCLWHIMKKVPEILGKHSCYESIKTLLDGVVYDSLSKSDFTERWGNMVEHYKLHDNEWLKGLFDERHRWVPVYVKETFWAGMSTTQRSESIDSYFDGYVNSKTTLKLFVEQYDTALNDKIEKESMADFDSFNTTIACVSHFGFEIQFQKAFTNAKFIEFQVEVSSMMYCNTSFERLEDSNSIFSVTENKKVNEKIKDVVFKVSFNEKDFKLRCTCCLFEFKGILCRHILCVLKLVGKTDSVPPYYIFPRWMKYVKRRYTLIKRGFEELQRVNIACDAFYEVASTMINSEDDLLKVLNLIKDLKNVLTCKEPSSRSAHELSSVPNHVTRMLDPTVTQSNGCPPLKRKTSNIDQILKKKLARNKQKNNQENKNDQCQEEGLLCTPIVQEIDNEEHLGDASQVLYCPQIRNQNVSCSELLQAQHHMNDPSS* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1222 767 SMART 26again6 550 577 IPR006564 GO:0008270
Tpr1g1222 767 Pfam FAR1 DNA-binding domain 52 135 IPR004330 -
Tpr1g1222 767 Pfam SWIM zinc finger 541 571 IPR007527 GO:0008270
Tpr1g1222 767 Pfam MULE transposase domain 254 348 IPR018289 -
Tpr1g1222 767 ProSiteProfiles Zinc finger SWIM-type profile. 539 575 IPR007527 GO:0008270
Tpr1g1222 767 PANTHER OS03G0843700 PROTEIN 9 647 - -
Tpr1g1222 767 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g1222 767 MobiDBLite consensus disorder prediction 1 16 - -
Tpr1g1222 767 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 647 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1222 Tpr-Chr1 10924721 10927976 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g1222 MULE 1.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1222 - - cam:101506732 1210.28