Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1218 ATGGCGTGTTTATTCGTTGTGGGTAGCATTGTTTACTTCAGCGGTGCTGCTCTTTACATTTTTGCCGGAAAACATGTCAGGGAGGCCAGGATTCTTAAATCTGTTACCCGGGTCAACCAGCTGAAGGACCTAGCACAACTGTTGGATGAAGAAATATCACCCTTGGCTGTTACAATCTCTGGCGAAGTTGCTTCTGAAAACCCAATGAAGTGTGAGATTGCCAATTTAAGAGGTGTAATAGCTGAAGAAACCGTAGAGAAAATTTATCTTAAAAATGAGGATTTTACTATTAGGCAAAAAGAGAAATGCAACTGTGTTAATCACAACAAGACATGCAATGTTGCCTGGACACTACATTCTGAGTTTATCTCATCCATTCCTAAAGAGGTCCCATGGTATCTGGATGATGGGACTGATCGTGTGTATGTTGTTGGAGCTCGTTTTGCGACTGATTTTGTATTACCTGTAAGAAGATCAAAATTTGACGAGTTGGGTCAGACACTTGTAGGTGAAACATCATATCATATTCAAGATATAAAGATCCTTGGATTGAAGAGGATTGAACGAGTACTTCCGGTTGGAACTTTGTTGACTGTTGTTGGTGAGGCCTCTAAAGATGATGACGGGACCATTCGAATTCAGCAACCTCCCAAAGGACCATTTTATGTGTCTTGCAAAATGATTGATGAACATATTGCAGATTTTGAGGGTTCTGCAAGGTTGTGTAAGTATATTTCTATGGGCCTGACAACGATTGGTGCTAGTCTAATAGCCAAAAATGCAATTGGAAGTCGAGGTTGA 801 0.407 MACLFVVGSIVYFSGAALYIFAGKHVREARILKSVTRVNQLKDLAQLLDEEISPLAVTISGEVASENPMKCEIANLRGVIAEETVEKIYLKNEDFTIRQKEKCNCVNHNKTCNVAWTLHSEFISSIPKEVPWYLDDGTDRVYVVGARFATDFVLPVRRSKFDELGQTLVGETSYHIQDIKILGLKRIERVLPVGTLLTVVGEASKDDDGTIRIQQPPKGPFYVSCKMIDEHIADFEGSARLCKYISMGLTTIGASLIAKNAIGSRG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1218 266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 7 262 - -
Tpr1g1218 266 PANTHER - 7 262 IPR044231 GO:0004842|GO:0016567
Tpr1g1218 266 Pfam E3 Ubiquitin ligase 113 255 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1218 Tpr-Chr1 10895985 10899301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1218 13 264 C3H Transcription Factor Family AT1G63900 50.000 1.92e-77 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1218 K15688 - gmx:100800734 250.366