Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1205 ATGGAAGATACATTTCCTAAGATGGAAATCTTTACACAAAAGGAATTACCAACTTGTTTGCAAGAAATAGTAACAACAGAATCCAAGTATTTGGAAGATACAATTATAAGAAGAGACTCTTACTCTCTCACTTCTTCATCAACATTATCACCACAAAATCTTTTCTGGTGTACTTCAAATTCTACTTCAATGAAACAAGAGGTAGTACCTTTAACCACTTTAGTTAGTCAAATGCCTTCAAATTTCAATGATCATTATGATGACATGAAGAATATGAAAGGTATAAACCAATCCCTTTCAGGATTCAATTCTATCTCCTCTCCTAATGTCATAGCCTCAGATATAAAACATAGTTTTGTTCCTCTAAATCTTTTGGAAACTCTCCCGGCATTAACCGTAACTCCAGTTTCTGATGAGCCAACAGGATCTTTAGCTTCTTCTTCTACTACACCGAAATATCCGAATTTGACTTTGTTTTTGCAGGAACCATCCATGCTATACAAAAGTAGTGAAATCATCTCAACAACTTCATATCCCACATATCCTATGTCCCAATTTGGCCTAACTCAGCATCAACAAAACAATGGCTATGGATTTTATGATTCAAACAAAATGAATAAGAATATGATGGAAAACTTGCAATCCAAGTCTTTCAATGAGAATTGGTTGAGTACTACTAAGACTCAACCTATGAAGTATGGTGCAAGAGGGAAGCTTTACAAAGGGGTGAGGCAGAGACATTGGGGGAAATGGGTTGCTGAAATTAGGCTACCAAGAAACAGGACTAGAGTTTGGTTAGGGACATTTGACACAGCTGAAGACGCCGCAATTGCATATGATACAGCAGCATATATACTAAGAGGTGAATGTGCTCAGTTAAATTTTCCAGATCTTAAGCATGTGATTCAAGCTAATTCATTGAATGGAACAACTGCTTCACTTGTTGAGGCAAAACTTCAAGCAATATCACAACAAGGTGTTTCTTCTTCTCATAGAAAACAAAGGTCAAATAATAAGCACATTGATGAGGTTAAAAATGGCAAGGAAGAAACTATGAAGGATTTGAAGGTTGGAGGTGACACCGATGACAGAAGCAAAAGTATGCAGAATGAGATATGTGATGTGGAAACTGTTCAGTTAAGTAGAATGCCATCTTTAGATATGGATATCATTTGGAATGAACTTCTAGTTTCTGATTCATGA 1203 0.3616 MEDTFPKMEIFTQKELPTCLQEIVTTESKYLEDTIIRRDSYSLTSSSTLSPQNLFWCTSNSTSMKQEVVPLTTLVSQMPSNFNDHYDDMKNMKGINQSLSGFNSISSPNVIASDIKHSFVPLNLLETLPALTVTPVSDEPTGSLASSSTTPKYPNLTLFLQEPSMLYKSSEIISTTSYPTYPMSQFGLTQHQQNNGYGFYDSNKMNKNMMENLQSKSFNENWLSTTKTQPMKYGARGKLYKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGECAQLNFPDLKHVIQANSLNGTTASLVEAKLQAISQQGVSSSHRKQRSNNKHIDEVKNGKEETMKDLKVGGDTDDRSKSMQNEICDVETVQLSRMPSLDMDIIWNELLVSDS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1205 400 SMART rav1_2 239 302 IPR001471 GO:0003700|GO:0006355
Tpr1g1205 400 MobiDBLite consensus disorder prediction 325 369 - -
Tpr1g1205 400 CDD AP2 238 298 IPR001471 GO:0003700|GO:0006355
Tpr1g1205 400 Gene3D AP2/ERF domain 239 297 IPR036955 GO:0003700|GO:0006355
Tpr1g1205 400 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700|GO:0006355
Tpr1g1205 400 Pfam AP2 domain 240 288 IPR001471 GO:0003700|GO:0006355
Tpr1g1205 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 9 399 - -
Tpr1g1205 400 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Tpr1g1205 400 PRINTS Ethylene responsive element binding protein signature 262 278 IPR001471 GO:0003700|GO:0006355
Tpr1g1205 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 399 - -
Tpr1g1205 400 SUPERFAMILY DNA-binding domain 239 297 IPR016177 GO:0003677
Tpr1g1205 400 MobiDBLite consensus disorder prediction 335 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1205 Tpr-Chr1 10815304 10817333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1205 1 395 AP2-EREBP Transcription Factor Family AT4G13620 39.702 1.11e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g1205 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1205 - - cam:101510582 463.381