Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1197 ATGACAACATCAGAAGAAACTTCAAGTCTGAAACTATTGAGCCAACATCTTTTGGAGGATATATCAGACACCTTTTTGACCAATCTCAGTTCTGTAAAACTTGAATACACATCATCATCATCATCAGAAATTGATTTGGATTCATACTTTTCAGAACAAAACAGTTTTCTTGAAATCCTTAGTTTTGAAGCTGATACAAAATTCATTGACTTCAGTTCTCATGATAAGGTACAAAACATGAAGGAAGAAAGACCCTTTGAGGAAACACATAACAAGAACTCGAATTCCACAGAACCAATTGTGTTGGAGAAGAAGGAACAAAGATGTTATGGAGGGAAACATTACAGAGGAGTGAGGAGAAGGCCATGGGGTAAATTTGCTGCAGAGATTCGTGACCCTTCAAGGAAAGGAAGCAGGGTTTGGTTAGGAACATTTAACAATGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGAGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTAAAGCAAATCCAAAGCCTAATAACAGTGTCAGTGGAAGGAAAAAGAGAATACATCAGAGAGATGCTGCTACAAGTTCAAGTTAA 612 0.3742 MTTSEETSSLKLLSQHLLEDISDTFLTNLSSVKLEYTSSSSSEIDLDSYFSEQNSFLEILSFEADTKFIDFSSHDKVQNMKEERPFEETHNKNSNSTEPIVLEKKEQRCYGGKHYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFNNEIDAAKAYDCAAFRMRGQKAILNFPLEAGKANPKPNNSVSGRKKRIHQRDAATSSS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1197 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 194 - -
Tpr1g1197 203 Gene3D AP2/ERF domain 113 174 IPR036955 GO:0003700|GO:0006355
Tpr1g1197 203 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Tpr1g1197 203 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Tpr1g1197 203 PRINTS Ethylene responsive element binding protein signature 154 174 IPR001471 GO:0003700|GO:0006355
Tpr1g1197 203 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Tpr1g1197 203 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Tpr1g1197 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 194 - -
Tpr1g1197 203 MobiDBLite consensus disorder prediction 174 203 - -
Tpr1g1197 203 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Tpr1g1197 203 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1197 Tpr-Chr1 10759809 10760825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1197 1 192 AP2-EREBP Transcription Factor Family AT5G07580 39.048 2.74e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g1197 AP2 2.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1197 - - gmx:100499732 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1197 1 10759809 10760825 Tpr1g1197 1 10759809 10760825 ECH