Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1194 ATGGCGGGGAACTTCAGATTCATGATGGATCAGAAGGATATTGTAAGATTCTTGACTACAACTATTGATAGTTTTATTCAAGATAGATTAATCAACAAAGAACAAAGAACACAACATAAAGATCAATGTGCTGAAAGGTTAGCAGCTGAAGATGAAAATGGTGACAAAGAAACCGAGGTAGAATATTCGGATCAAGCAGTATTGGCAAATCTAGATTGGGGTATTGAAGCTCTTGAAGAAGCTATTAATACCTATAATATGGAAACTAAACTTGCAAGATTAGATTATGCAGAGAAAATGTTGCAAGTGTGTGCAATGTTGAACCCTAAGCAAAAAACTGCTGGAGTGCCAAATTCATATTTATCAGCTTGGGCACATTTAAATTTATCATATTTATGGAAATTGAGGAACAATATTCAGAGTTGTATTTTTCATGCTCTTGAGATGTTTATTGTTGATCCATTTTTCGCTAGGATTGATTTCGCGCCTGAGTTATGGAAAAACCTGTTTCTTCCTCATATGAGTTCAATTGTAGGGTGGTATTCTGAGGAGAGACATAAGCTTATGATGGAAGTGATACCTGAATCTTCTGATTTTTCTTATACTGCTGATTTTGATAAAGTTTTCAATGAGTCTTTGGTATTTTCTATGAGGCCGAATCACCTAGATAAATTGCAAAAACTTGAGCAGCTTTATGGAGAGTCTTTAGATGAGAACACAAAGCTATATGCAAAATATTATAATGATTGTATGAACTCTGATTCTACCTCAAGCAAGAAGGTTATTCCGATGTTGCCGATTGCTGAGCCTCCGATGACTCCTTTGCATGAGTTGAGTCGGTCTGTTCCTGATTTCGTAAAATTTGGTCCTATTTTGCCTAAGAGCTCTGGATTTTCTATGGCAACAAGAAGATCTAATGACGGTTTAAATGAAACAAACAGAGAGAATTTAACTTCAAATTCCAACCATTCAAAGGGGGAGAAATCATCCATGTGGGGTGCTAAGGAGAGCATAATTGAAGAGATTGAAGATGATTCAGATTCTGAGCATTATGACGCGTCTGTGGATTCTGATAAAATCAATATTTTCTCACCCGACTTGAAGACAAATATCAAGGATGAGGATGTTGAACCAAAAGTATATCGATCAAACCAGAAGGATCAAATGCAATCTCCTAACATCTCTCCTATGGAATCCCCAAGAGCTGCTCGAAAGCATTCATCTCCAAATCCTCGAATCCATAGGAAAAAAGAATCAAAGTTTTTGCGGTTACTATCTAATCGTTTTAAGGGATCAACTATTTCTGATCATTCTCTATCATCATCTCCTGACACAAGCTCTGATCATATTTTCAACGGTGATGAAGAAGAAGCGATGGTCTTGAATAATATTAAGAGGAAAAATGATAGTCAAACAGCTAGTGTGAATCAAGACAATGAGAATAGTCTGGGGCTGAATGACAGTTCCCATTGTGAAAGTGAGGATGGATATCAAAGCTCTACTTCATTTCCAAAATTAGGGAAACTGACTATTGGATCAAAACCACCCAAAGATTTTGTTTGTCCAATCACAGGTCAGATATTTAGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCGATTCAAGAGTGGCTCGGAACAGGAAACACAACATGTCCAATCACGCGGCAGCCTCTATCTGCAAACATCTTACCAAAAACAAACTATGTTTTGAAGAGATTGATAGTATCATGGAAAGAACAGCATCCAGAACTAGCTCAAGAATTTTCAAATTCTAACACGCCAAGGGGTTCTTCATGTTCTCCATCTGCAAAAGACATCGCAATGATTTCGACTATACAAAGAACAACTGATTCACCAAGTCAGAAGTACAAAGATGATTATATTAGACAACGGAACAATAGATTTGTGAGGGTTGCTGTCGGTGCATCTCCAACTAGTGTATTATCTCAAGCTGCAGTTGAAACGATTATAAATTCCTTGACACCTTACATCACAAGTCTATGTACATCAGAAAACTTGCAGGACTGTGAAGAAGCTGTATTGGAAATAGCAAGATTGTGGAAGGACTCAAAGACTGATCCTCATATTCAATCTTATTTATCAAAACCAACTGTCATAAGTGGTTTAGTAGAAATTCTCTCAGCTTCTCTGAATAGAGAAGTTCTGAGAAGATCGATATATATTCTTTCCGAACTAATTTTGGCTGATGAAAGAGTTGGAGAAACACTTAATAGTGTAGATTCTGATTTCGATTGCTTGGCTACTCTACTTAAGAATGGTTTGTTTGAGGCTGCACTTCTTATTTACCAACTACGGCCAGTTTTTGCCCAGCTTTCAGAACATGAACTTATACCCTCTCTTATCCAAGTAATCCAAAACAAAAATGAGGATATAGATGGTTTTCAGTTATCTATAGACCCCGGAGATGCTTCCATAGCAATTCTTGAGCAAATTTTAATGGGAGGGGATGAATATAACAGGTCTGTCAATGCTTCAAGTGTTATCTCGGCAAATGGAATTCCAGCCATAGTGAAGTATTTGGACAGAATGGAAGGGAGGAGGTCTGTCATTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGATCTCAATAGCAAATAGAATTGAATTGTCGCCTATTCTTGAATTATTTCATGCTGGAAATGATAGTGTGAGAGGAATCTGTGTGGAGTTTCTCTCAGAACTGGTCCGATTGAATAGAAGGACGTTCAGCAATCAGATATTACAGATAATCAAAGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAACATCAAATTGCTGTTTCCAGTCTTCTTATTCAGCTAGATCTTTTGGTTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAGACACTGATAGAAGCACTTTGGCAAAAGGACTTCTCAAATAATCAAATGAAGGCTTTAGATGCTTTACTATTTCTTATCGGACACGTCACTTCCTCAGGAAAGTCGTATACTGAAGCTTGGTTGCTGAAAGTTGCAGGATTTGATCAGCCTTACAATGTTTTAATGAAGGCCGAGCAATTGGGATACCATGACAATGATTTGATGGAAACAATGGAGGATGAGAAAAATGCCATGAAATCTTGGCAGAAAAGGGTAGCTTCTGTACTTTGCAATCACGAAAACGGATCAATATTTCAAGCTTTGGAAGAATGCCTAAAGAGTAACTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTTTACTCTACCTGATACTGGTGTAAGGGATATTGCTCGGAAATCCCTGCTCGAGGCACTTATAAATGTCCTCCAATCATCCAAGAACCTAGAGGAAAAGATCCTGGCTACCCTAGCTTTGAAGTCTTTCATTAGTGATCAAACTGCTCATGAAGCACTTAGAGTATATGCTAAAAGCATCTATAGAATCTTGAGGAAGCTGAAGAAATATTCAACAGTTGCAGCTGATATATTGAAAGCCTTACTAAACTTAAATTCTGTTGATGTGACAGAGTTGTGGAGTTGTAAAGAAGTAGTAGAGTTAGATTTGAGCTCAAATGGAGAAGTGCTTTCTTTGCTTTACCACAATGGTCAGGTCTTAAGTGGACATGCTGATGGAACTATCAAGGTATGGGACGCAAGGAAGAGAATACCACGAGTAATTCAAGAAACTCGTGAGCACAAAAAAGCTGTCACATCGCTTTGCTCTTCTGTTGATAAACTATACAGTTCTTCGTTGGACAAAACAATCCGGGTTTGGATGATTAAACCTGAAGGGATTAAATGTATAGATGTTTATGACGTTAAGGAGGCAGTGTATGAGCTAGCAGCCAATGCTGAATTGGCATGCTATGTAACTCAAGGAACAGGAGTTAAGGTTTTTAATTGGTTAGATACTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGTCTTGCTGTTGCCGGCGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATACAGGAGGTTGACTTATCCAAATATACATCAACTTCATTCTTCACTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCATTCAAATTCATGATGATTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACTGCAGGAAAGATATTTTCAATTTCCACCAAAATGGTGGTGGGATCACTCTCAACTGGACTCGACATCCATCGTGCAGCCATCACCAGTGACTTTATATTTGCTGGTACAAAATTTGGCACCATTGAGGTTTGGCTGAAAGATAAGTTCACCCGAGTCGCTTCCATCAAAATGGCAGGCGGTCAAACAAAAATTACATCATTAGTGTCAGATGTTGATGGCATGATGCTTTTTGTTGGTTCCTCTGATGGAAAGATCCAGGTTTGGGCTTTAGATTAA 4473 0.3827 MAGNFRFMMDQKDIVRFLTTTIDSFIQDRLINKEQRTQHKDQCAERLAAEDENGDKETEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQSCIFHALEMFIVDPFFARIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVIPESSDFSYTADFDKVFNESLVFSMRPNHLDKLQKLEQLYGESLDENTKLYAKYYNDCMNSDSTSSKKVIPMLPIAEPPMTPLHELSRSVPDFVKFGPILPKSSGFSMATRRSNDGLNETNRENLTSNSNHSKGEKSSMWGAKESIIEEIEDDSDSEHYDASVDSDKINIFSPDLKTNIKDEDVEPKVYRSNQKDQMQSPNISPMESPRAARKHSSPNPRIHRKKESKFLRLLSNRFKGSTISDHSLSSSPDTSSDHIFNGDEEEAMVLNNIKRKNDSQTASVNQDNENSLGLNDSSHCESEDGYQSSTSFPKLGKLTIGSKPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLGTGNTTCPITRQPLSANILPKTNYVLKRLIVSWKEQHPELAQEFSNSNTPRGSSCSPSAKDIAMISTIQRTTDSPSQKYKDDYIRQRNNRFVRVAVGASPTSVLSQAAVETIINSLTPYITSLCTSENLQDCEEAVLEIARLWKDSKTDPHIQSYLSKPTVISGLVEILSASLNREVLRRSIYILSELILADERVGETLNSVDSDFDCLATLLKNGLFEAALLIYQLRPVFAQLSEHELIPSLIQVIQNKNEDIDGFQLSIDPGDASIAILEQILMGGDEYNRSVNASSVISANGIPAIVKYLDRMEGRRSVISILLCCMQAEKSCKISIANRIELSPILELFHAGNDSVRGICVEFLSELVRLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQIAVSSLLIQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNNQMKALDALLFLIGHVTSSGKSYTEAWLLKVAGFDQPYNVLMKAEQLGYHDNDLMETMEDEKNAMKSWQKRVASVLCNHENGSIFQALEECLKSNSLKMAKSCLVLATWLTHMLFTLPDTGVRDIARKSLLEALINVLQSSKNLEEKILATLALKSFISDQTAHEALRVYAKSIYRILRKLKKYSTVAADILKALLNLNSVDVTELWSCKEVVELDLSSNGEVLSLLYHNGQVLSGHADGTIKVWDARKRIPRVIQETREHKKAVTSLCSSVDKLYSSSLDKTIRVWMIKPEGIKCIDVYDVKEAVYELAANAELACYVTQGTGVKVFNWLDTPKLINFNKYVKCLAVAGDKLYCGCSGYSIQEVDLSKYTSTSFFTGTRKLLGKQTIHSIQIHDDFLFACGSSVDATAGKIFSISTKMVVGSLSTGLDIHRAAITSDFIFAGTKFGTIEVWLKDKFTRVASIKMAGGQTKITSLVSDVDGMMLFVGSSDGKIQVWALD* 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1194 1490 SUPERFAMILY WD40 repeat-like 1220 1489 IPR036322 GO:0005515
Tpr1g1194 1490 MobiDBLite consensus disorder prediction 383 397 - -
Tpr1g1194 1490 Pfam U-box domain 516 586 IPR003613 GO:0004842|GO:0016567
Tpr1g1194 1490 MobiDBLite consensus disorder prediction 371 418 - -
Tpr1g1194 1490 SUPERFAMILY RING/U-box 514 587 - -
Tpr1g1194 1490 Gene3D - 654 1194 IPR011989 -
Tpr1g1194 1490 Gene3D - 1290 1490 IPR015943 GO:0005515
Tpr1g1194 1490 MobiDBLite consensus disorder prediction 467 499 - -
Tpr1g1194 1490 MobiDBLite consensus disorder prediction 298 328 - -
Tpr1g1194 1490 SMART WD40_4 1199 1237 IPR001680 GO:0005515
Tpr1g1194 1490 SMART WD40_4 1242 1279 IPR001680 GO:0005515
Tpr1g1194 1490 SMART WD40_4 1447 1488 IPR001680 GO:0005515
Tpr1g1194 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1456 1490 IPR001680 GO:0005515
Tpr1g1194 1490 Pfam WD domain, G-beta repeat 1248 1278 IPR001680 GO:0005515
Tpr1g1194 1490 Pfam WD domain, G-beta repeat 1220 1237 IPR001680 GO:0005515
Tpr1g1194 1490 ProSiteProfiles U-box domain profile. 514 589 IPR003613 GO:0004842|GO:0016567
Tpr1g1194 1490 SMART Ubox_2 518 582 IPR003613 GO:0004842|GO:0016567
Tpr1g1194 1490 SUPERFAMILY ARM repeat 660 1016 IPR016024 -
Tpr1g1194 1490 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1456 1490 - -
Tpr1g1194 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1249 1278 IPR001680 GO:0005515
Tpr1g1194 1490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 508 597 IPR013083 -
Tpr1g1194 1490 SUPERFAMILY Lipovitellin-phosvitin complex, superhelical domain 973 1189 IPR011030 -
Tpr1g1194 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1490 - -
Tpr1g1194 1490 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1490 - -
Tpr1g1194 1490 CDD RING-Ubox_PUB 519 561 IPR045210 -
Tpr1g1194 1490 MobiDBLite consensus disorder prediction 297 331 - -
Tpr1g1194 1490 ProSiteProfiles Trp-Asp (WD) repeats profile. 1224 1237 IPR001680 GO:0005515
Tpr1g1194 1490 Gene3D - 1195 1289 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1194 Tpr-Chr1 10735530 10743785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1194 505 912 U-box Gene Family AT1G23030 24.826 5.58e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1194 - - gmx:100776142 2409.79