Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1183 ATGATGAACAACAACAGCACCTCACAACCCCAAAACAACGACGACTTTGACGCGAATGGGTTCACGTACATCTTAACATTTGTATTTGCTCTTGTATTCTTGATTCTTACAATTGTTGTTGCTTGTGTTCGGCTTCGTATGTCACGGGGTCCAGACATGATCAATATTTTGTCAGGTTTTCCACCACATCGTCAGGAAGACTCAATTATGGAGCAAGGGCTACGCCGTAATAGAGACACAAGTTTTGAAGGATACCCAAAAATGCTATACTCTCAAATTGAAAAGAATATTTTAGGTGGTTCTTCAACTTCAAGTTGCTCTATTTGTTTAGGGGACTACAAAGAAAGTGACATTTTGAGGTTACTTCCTGATTGTGGTCATCTTTATCATGTTGCTTGTGTTGATCCATGGCTTAGGTTACATTCTACTTGTCCCATATGTAGAAAACCATTGCTAGCTTCAAGCTAA 468 0.3932 MMNNNSTSQPQNNDDFDANGFTYILTFVFALVFLILTIVVACVRLRMSRGPDMINILSGFPPHRQEDSIMEQGLRRNRDTSFEGYPKMLYSQIEKNILGGSSTSSCSICLGDYKESDILRLLPDCGHLYHVACVDPWLRLHSTCPICRKPLLASS* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1183 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 152 - -
Tpr1g1183 155 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Tpr1g1183 155 CDD RING-H2_PA-TM-RING 106 148 - -
Tpr1g1183 155 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 152 IPR045899 -
Tpr1g1183 155 Pfam Ring finger domain 105 148 IPR001841 -
Tpr1g1183 155 SMART ring_2 106 147 IPR001841 -
Tpr1g1183 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 152 IPR013083 -
Tpr1g1183 155 SUPERFAMILY RING/U-box 105 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1183 Tpr-Chr1 10678841 10679553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1183 65 154 C3H Transcription Factor Family AT5G06490 46.237 1.16e-23 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1183 - - gmx:102663718 191.815