Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1182 ATGAACAACACTTCCAATAATTCTGAAAACCCTTCAGAAAAATCAACTACATTACCATATTATTACATTGGATTTTCTTTTGCATTTATCCTTTTTGTGATCTTCATACCTATCTATTTCAGTTACTGTAACCATACGAATTCGCGAAACAGACACCAATCTGCTGCCGGCAGCAACAACAGGACAGTGGTCTTTATGGAGAGAGATCATACAACTGAAGTGAATATTGAAGAACGAGAAGCTACCCTTAATAGTTACCCCGTTTTGTTGTACTCTGAAATCAAGCTTCATAAGCCTGCAGATTCAACATCACTCATTTGCTCAATTTGTTTGGCAGATTATAAAGATTCAGAGTGGTTGCGACTCTTATCTGATTGTGGTCACTTTTTTCATAAGGAATGTGTTGCTACATGGTTTAGGCTAAACATGTCATGTCCTATGTGTCGAAATTCGCCACTTCCAACATCCCTTGCTCAAGTTACACCAGTGGTAAACTACACATGA 504 0.379 MNNTSNNSENPSEKSTTLPYYYIGFSFAFILFVIFIPIYFSYCNHTNSRNRHQSAAGSNNRTVVFMERDHTTEVNIEEREATLNSYPVLLYSEIKLHKPADSTSLICSICLADYKDSEWLRLLSDCGHFFHKECVATWFRLNMSCPMCRNSPLPTSLAQVTPVVNYT* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1182 167 SUPERFAMILY RING/U-box 82 152 - -
Tpr1g1182 167 SMART ring_2 107 148 IPR001841 -
Tpr1g1182 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 153 IPR013083 -
Tpr1g1182 167 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Tpr1g1182 167 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 159 - -
Tpr1g1182 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 IPR045899 -
Tpr1g1182 167 Pfam Ring finger domain 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1182 Tpr-Chr1 10677516 10678264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1182 80 165 C3H Transcription Factor Family AT2G35910 50.000 2.77e-25 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1182 - - mtr:MTR_1g090460 160.614