Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1181 ATGAACAACACTTCCAATTCTGATAACCCTTTAGAGAACTTAAATATATTAACATATTATTATATTGGACTGTCTTTTGCTCTTATCTTCCTCATGGTGTTCATAGCTCTATTTTCATGTTACTGTAACAACAGAAACCGCCAAAACAGGCTGCAATTTAGAGGAAGAAATTCTAACAGACCAATGGTCATCACAGAGACGGATAATGAAGTGAATATGGACGTTTGTGAGGAAGAACAAGATTCCATTCTTAATAGTTACCCTGTTTTGTTGTTCTCTCAAGTCAAGCTTCACCATAAAGATGATTCAACATCACTCATTTGCTCAATTTGTTTGGCAGATTATAAAGATTCAGAGTTGTTGCGACTCTTATCTGATTGTGGTCATTTTTTTCATAAGGAATGTGTCGCTACATGGTTTAGGCTAAACATGTCATGTCCTATGTGTCGGAACTCGCCACTTCCAACACCCATTGCTCAAGTTACACCATTGGCAAACCAAACAACACATGATTGA 516 0.3682 MNNTSNSDNPLENLNILTYYYIGLSFALIFLMVFIALFSCYCNNRNRQNRLQFRGRNSNRPMVITETDNEVNMDVCEEEQDSILNSYPVLLFSQVKLHHKDDSTSLICSICLADYKDSELLRLLSDCGHFFHKECVATWFRLNMSCPMCRNSPLPTPIAQVTPLANQTTHD* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1181 171 SMART ring_2 108 149 IPR001841 -
Tpr1g1181 171 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Tpr1g1181 171 SUPERFAMILY RING/U-box 86 154 - -
Tpr1g1181 171 Pfam Ring finger domain 108 150 IPR001841 -
Tpr1g1181 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 154 IPR013083 -
Tpr1g1181 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 165 IPR045899 -
Tpr1g1181 171 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 165 - -
Tpr1g1181 171 SMART ringv_2 107 150 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1181 Tpr-Chr1 10674837 10676319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1181 20 166 C3H Transcription Factor Family AT2G35910 37.748 1.12e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1181 - - adu:107466513 174.481