Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1179 ATGGAGCATCACTTAGTGTTGCTTCTTTGTTTTTCTACATTGTTATATGCTTCTTCTGCATTGAATTTTGAGGGTTTGGCTCTATTGTCACTCTTGAGCCACATGAATGTTGTTTCTCCTATCATAAACTCCACATGGAAATCCTCTGATTCCACTCCATGTTCTTCATGGAAAGGAGTAGAATGTGATCATGCTTTAAATGTAATAACTCTAAATCTAACTGATTATTCAATTTCTGGTCAATTAGGATCTGGAATTGGAAAATTAATTCACCTTCAAACCCTAGATTTGTCACTTAATGATTTCTCAGGAGAAATTCCTTCAGAATTAAGCAATTGTAGTAAGCTTCAGTACATGGATCTTTCTTCAAACAACTTCAGTGGTGAAATTCCTCAATCCTTGTTTCAACTTAATCATTTGACAGATTTGTATCTCTTCAATAATATCTTAAGTGGTTCAATTCCTGCTAATATTGGAAATTGTAGTCAATTGAGTTCCGTAATTTTGGACTCGAATCGATTGGATGGAGTTCTTCCTGAGAGTCTAAACGATCTAAAAGAACTTATTTACCTAAGCCTCAATAGTAATAATCTTGGAGGTACCATTCAATTCGGGTTGAAAAATTGCAAAAACTTAAATATTCTGAGTCTTTCAGACAATAAATTTATTGGTAGTATTCCATCAAGTTTAGGGAATTGTAGTGGTCTAACAGAATTCTATGCCTCATTTAATAACTTAGAGGGTAGCATACCATCAAGTTTAGGTTTACTTCACAACCTTACTAATCTACTGATTCCGAACAATCTTTTGTCTGGGAATATACCTCCACAGATTGGTAATTGTAAGTCATTGAAACTGTTACATTTGTATTTCAATGAACTTGAGGGGGAAATTCCTAGTGAGTTGGGAAAGTTGAGTAAATTACTCGAGCTTCAATTGTTCCAAAACCATTTGGTAGGTGAAATTCCACTTAGCATATGGAAAATTCAAAGCCTTGAGCATGTCCTTGTGTATAATAATAGTCTATACGGGGAGCTACCTTTAGAGATGACCGAGCTCAAAAATCTCAAGAACATCTCATTGTTTAACAACCGATTCTCGGGAGTTATACCTCAAAGCTTAGGAATTAATAGCAGTTTGGTGTGGTTGGATTTTACGTTTAACATGTTCAATGGTACACTTCCACCAAATCTTTGTTTTGGAAAGCAATTAGAATTGCTGGATATGGGTGGTAATCAATTTATTGGAAGCATACCTTCTGATGTAGGAAGGTGTACAACTCTCACAAGGGTGAGACTCGAGGATAATAATTTTTCCGGGCGTCTTCCTGATTTTGAAAAGAATCCAAATTTCTCGTTCATGAGCCTCAGAAACAACAGTATCAACGGAACAATTCCGTCAAGTTTGAGTAACTGCACAAATCTCTCTCTCTTAGATTTGTCCACAAACAGCTTAACGGGTTTTGTACCCTTAGAGCTTGGAAACCTTGTGAATCTTCAGAGTTTGGATCTTTCTTTCAATAATTTGGAAGGTCCTTTGCCACCTCAACTTTCAAAGTGTACCAAAATGATTAGTTTTGATGTGGGATTCAATTTCCTTAATGGTTCGTTTCCATCGAGTTTTCGGAGCTGGACAGCATTAGCCACTTTAATTCTTAGTGAGAATAATTTTAGTGAGGGAATCCCAACTTTCTTGTCAGAATTTGAAAATCTCAATGACTTAAAACTTGGTGGAAATAACTTTGGAGGAAATATTCCGAAATCAATTGGAGAATTGCAGAGTTTGTCATATGATTTGAATCTAAGTGCTAATGGACTAGTAGGTGAGCTCCCTAGGGAGATAGGAAACCTGAAGAGTCTGGTAAACCTGGATCTATCTTGGAACAATTTGACAGGAAGCATACAAGTTCTCGACGAGCTAAGTTCATTATCCGAACTGAACATCTCATACAATTCTTTAGAAGGTTCAGTATCACAAAAACTGACGAACTTATCGAATTCTTCTTCATCATTTTTGGGCAATCCGGGCCTGTGTGTTAGCCTTTTGTTATCCAATGGCTTGAATTTCTCAAGAAGTAGCCATTTAAAGCTATGTAATCAAGATGCCGTAAAATCAAAAGGTCACAGTAAACTTGCAATTGTGATGATAGCACTTGGATCCTCGATATTTGTGGTGCTCTTGCTAGGACTAATTTATATATTTTTAGTCAGAAAGTCTAAACAGGAAGCCATCGTCACCGAAGAAAATGACCTTCTCAAGAAAGTGATGAAAGCTACAGAGAATCTAAATGATGAGTATATTATAGGCAGAGGTGCTGAAGGAGTTGTTTACAAAGCTGTAATAGGTCCAGACAATATTTTGGCAGTGAAGAAACTTGTATTTGGCGAGAACGAACGAAAACGCTTAAGCATGTTAAGAGAAATCAAAACACTTTCACAGATTAGGCATAGAAATTTGGTGAGACTTGAAGGTGTTTGGTTGAGAGAAAACTATGGTCTAATCTCATACAAATACATGCCAAATGGAAGCCTTTATGAAGTTTTGCACGAGAAGAATCCACCGCAATCGTTAAAATGGAATGTCAGGAATAAGATAGCTGTTGGAATTGCTCAAGGATTGGCTTATCTTCATTATGACTGTGATCCTGTCATAGTTCATAGAGACATCAAAACAAGCAACATACTTTTAGATTCTGACATGGAGCCTCATATTGCTGATTTCGGCCTAGCTAAGCTTTTGGATCAGTCTTCTAGTTCTACCTCAACACAGTCAATAAATGTTTCTGGTACACTCGGTTACATCGCACCAGAGAATGCATATACAACTGTAATGGGAAAGGAATCTGATGTATACAGTTATGGGGTGGTTTTGCTTGAGTTGATATCAAGAAAGAAGGCAATAGATTCATCATTTATGGAAGGAATGGATATTGTTTCTTGGGTGAGATCATTGTGGGAGGAAACAGGAGTTGTTGATGAAATTGTTGATTCAGAACTTGCCAATGAAATTTCTAGATATAATTCAAATGTGATGAAGGAAGTAACCAAGGTGCTTTTGGTGGCTTTCAAATGTACAGAAAGGGATCCACGTAGGAGACCTACAATGAGAGAAGTTATCAAGAATTTGTAG 3129 0.3675 MEHHLVLLLCFSTLLYASSALNFEGLALLSLLSHMNVVSPIINSTWKSSDSTPCSSWKGVECDHALNVITLNLTDYSISGQLGSGIGKLIHLQTLDLSLNDFSGEIPSELSNCSKLQYMDLSSNNFSGEIPQSLFQLNHLTDLYLFNNILSGSIPANIGNCSQLSSVILDSNRLDGVLPESLNDLKELIYLSLNSNNLGGTIQFGLKNCKNLNILSLSDNKFIGSIPSSLGNCSGLTEFYASFNNLEGSIPSSLGLLHNLTNLLIPNNLLSGNIPPQIGNCKSLKLLHLYFNELEGEIPSELGKLSKLLELQLFQNHLVGEIPLSIWKIQSLEHVLVYNNSLYGELPLEMTELKNLKNISLFNNRFSGVIPQSLGINSSLVWLDFTFNMFNGTLPPNLCFGKQLELLDMGGNQFIGSIPSDVGRCTTLTRVRLEDNNFSGRLPDFEKNPNFSFMSLRNNSINGTIPSSLSNCTNLSLLDLSTNSLTGFVPLELGNLVNLQSLDLSFNNLEGPLPPQLSKCTKMISFDVGFNFLNGSFPSSFRSWTALATLILSENNFSEGIPTFLSEFENLNDLKLGGNNFGGNIPKSIGELQSLSYDLNLSANGLVGELPREIGNLKSLVNLDLSWNNLTGSIQVLDELSSLSELNISYNSLEGSVSQKLTNLSNSSSSFLGNPGLCVSLLLSNGLNFSRSSHLKLCNQDAVKSKGHSKLAIVMIALGSSIFVVLLLGLIYIFLVRKSKQEAIVTEENDLLKKVMKATENLNDEYIIGRGAEGVVYKAVIGPDNILAVKKLVFGENERKRLSMLREIKTLSQIRHRNLVRLEGVWLRENYGLISYKYMPNGSLYEVLHEKNPPQSLKWNVRNKIAVGIAQGLAYLHYDCDPVIVHRDIKTSNILLDSDMEPHIADFGLAKLLDQSSSSTSTQSINVSGTLGYIAPENAYTTVMGKESDVYSYGVVLLELISRKKAIDSSFMEGMDIVSWVRSLWEETGVVDEIVDSELANEISRYNSNVMKEVTKVLLVAFKCTERDPRRRPTMREVIKNL* 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1179 1042 PRINTS Leucine-rich repeat signature 475 488 - -
Tpr1g1179 1042 PRINTS Leucine-rich repeat signature 496 509 - -
Tpr1g1179 1042 ProSiteProfiles Leucine-rich repeat profile. 619 641 IPR001611 GO:0005515
Tpr1g1179 1042 SUPERFAMILY RNI-like 95 438 - -
Tpr1g1179 1042 SMART serkin_6 762 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1179 1042 Pfam Leucine rich repeat 455 509 IPR001611 GO:0005515
Tpr1g1179 1042 Gene3D Phosphorylase Kinase; domain 1 734 838 - -
Tpr1g1179 1042 SMART LRR_typ_2 89 113 IPR003591 -
Tpr1g1179 1042 SMART LRR_typ_2 496 520 IPR003591 -
Tpr1g1179 1042 SMART LRR_typ_2 617 644 IPR003591 -
Tpr1g1179 1042 SMART LRR_typ_2 137 161 IPR003591 -
Tpr1g1179 1042 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 138 1041 - -
Tpr1g1179 1042 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 149 - -
Tpr1g1179 1042 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 138 1041 - -
Tpr1g1179 1042 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 149 - -
Tpr1g1179 1042 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Tpr1g1179 1042 Gene3D Transferase(Phosphotransferase) domain 1 839 1042 - -
Tpr1g1179 1042 ProSiteProfiles Protein kinase domain profile. 762 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1179 1042 Gene3D Ribonuclease Inhibitor 21 218 IPR032675 -
Tpr1g1179 1042 Pfam Protein kinase domain 765 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1179 1042 SUPERFAMILY Protein kinase-like (PK-like) 752 1041 IPR011009 -
Tpr1g1179 1042 Gene3D Ribonuclease Inhibitor 219 447 IPR032675 -
Tpr1g1179 1042 Gene3D Ribonuclease Inhibitor 448 690 IPR032675 -
Tpr1g1179 1042 SUPERFAMILY L domain-like 372 680 - -
Tpr1g1179 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 884 896 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1179 Tpr-Chr1 10665764 10669940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1179 6 1042 Receptor kinase-like Gene Family AT1G17750 49.815 0.0 956
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr1g1179 Pkinase 6.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1179 - - gmx:100817655 1385.16