Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1169 ATGTTTTCTAGGTTGTTACGTCCTCATGACCATGAAGGAAGTGTTGTTGTTGTTCAAGAAGAAACAAATCATCATCATAGTCACCTTACTGACCCTTGTCTTGTTCTTACTTCTGATCCTAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGTTTTGTTGATGCTGTCACTCAACTTGGTGGTCCTAGCAAAGCCACACCAAAAGCAATCATGAGGAGCATGAACGTCAAGGGTTTGACACTCTATCATTTGAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAACAAGCTGGAAAAGATTCGGACGAGGGATGCAAAGATGGTTCATATCTTCTTGAAAGCCCTAGTACTGAAAACTCATCTCCAAAGTTACCAGTTTCTGATGCAAATGAGGGCCATGAAGTCAAGGAGGCATTAAGAGCACAAATGGAAGTGCAGAGTAAGCTACATTTACTAGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAAGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCGTGTAAGATGTTGGCTGATCAGTTTATTGGTGATGCAACTATAGACACAGACATCCAAAAATTTCAAGAACTACCAAATACCGTGCTAGGTGGAAATGGAATGCATGTTTCAGAAGTACCCTATATTCTCCAGCCCCAAGGTGCAAACTGTTCTGCTGAAAGTTGCCTAACATCGCTTGAAAGTCTCAGAGGATTGACTCTAGAAGGATCACTTGGTGGTGGGACAAAGAGGATGCTGGGTTTGGACTCGATGGTAGCGCCTTTGATCTGGAGTGATACTAACATGAGAACTCAAGGCATTCATTTATCCCAAGTCAATCCTCAAGGAATAGCAAGGTATGGCATGTAG 882 0.4331 MFSRLLRPHDHEGSVVVVQEETNHHHSHLTDPCLVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPSKATPKAIMRSMNVKGLTLYHLKSHLQKYRLGKQAGKDSDEGCKDGSYLLESPSTENSSPKLPVSDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLADQFIGDATIDTDIQKFQELPNTVLGGNGMHVSEVPYILQPQGANCSAESCLTSLESLRGLTLEGSLGGGTKRMLGLDSMVAPLIWSDTNMRTQGIHLSQVNPQGIARYGM* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1169 293 Pfam MYB-CC type transfactor, LHEQLE motif 136 181 IPR025756 -
Tpr1g1169 293 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 293 - -
Tpr1g1169 293 SUPERFAMILY Homeodomain-like 41 96 IPR009057 -
Tpr1g1169 293 Pfam Myb-like DNA-binding domain 44 94 IPR001005 -
Tpr1g1169 293 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Tpr1g1169 293 Gene3D - 40 98 - -
Tpr1g1169 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
Tpr1g1169 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 293 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1169 Tpr-Chr1 10590357 10593559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1169 31 237 G2-like Transcription Factor Family AT3G24120 49.573 8.60e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr1g1169 Myb_DNA-binding 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1169 - - gmx:100779871 434.106