Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1161 ATGGAACCAGCCCCTGAACCTCAACAACTTTCTTTGGCCTCTAGGGATCACACCAACACCAACATCATCAAAGGCAAAAGAACCAAAAGGGTTAGGCCACAATCTCCTATACCTTTTTCCATCACTGCTAATTCTTCGACCGAAGGAGGCGCAGGAGGAGGAGGAGGAAGAGAAGATTGCAACAACGGTAATGATGTCGTCGTCAACAACAATATCAACAATAATAATAATAACAGCTCTCCAACAACTTCTTATGTAGCTGAAAAACAGGAGGACAATATTCTTGATGAAGAATATGATATGGCAAATTGTTTGATTTTATTGGCACAAGGACAATCAAGGGATTCATCGAAAAATACCGATGAATATGACGGTGGAATGATGAACTATACGAAATACAGCAGTAGAAAATTCATGGAAGCTGCTACTTTGGATTCTGGAAGAGCAGGTTACTATGTTTATGAATGCAAAACATGTAATAGAACTTTTCCTTCATTCCAAGCACTTGGTGGCCATAGAGCAAGTCATAAAAAGCCAAAAGCATTGGCAATTGCTCAAGAGAGAAAACAACTTTTTGATGATGATCAAGATTTTCAATTCAAAACCAATCATAAATCAATTTCCCTTCAATTGAACAACAATGGTAAGGGAAATCTTTACGGCGGAAACAACAACAGCAACAACAACAATAAGTCTAAGGTTCATGAGTGTTCCATTTGTGGTTCTGAATTCACATCTGGTCAAGCACTTGGTGGGCATATGAGGCGACACCGCGCGCCGGTGGGGACCACTGCTCCTGCCAACACCACACTTTCCTTGACACCAATGGCTTTGGAACATGATGAAGATCAACCTAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTGGATCTCAATCTTCCTGCACCTGAAGATGAACATAGAGAATCAAAGTTTGCCTTTGCTTCCAAGCAACAACAACAACATGGCCAAAAACAACAACAGCAACAGCAACAACAACAACAACAACAACAAACAAATCTTGTCTTCTCTTCGCCGGCTTTGGTGGATTGTCATTACTAA 1062 0.404 MEPAPEPQQLSLASRDHTNTNIIKGKRTKRVRPQSPIPFSITANSSTEGGAGGGGGREDCNNGNDVVVNNNINNNNNNSSPTTSYVAEKQEDNILDEEYDMANCLILLAQGQSRDSSKNTDEYDGGMMNYTKYSSRKFMEAATLDSGRAGYYVYECKTCNRTFPSFQALGGHRASHKKPKALAIAQERKQLFDDDQDFQFKTNHKSISLQLNNNGKGNLYGGNNNSNNNNKSKVHECSICGSEFTSGQALGGHMRRHRAPVGTTAPANTTLSLTPMALEHDEDQPRKKRNVLSLDLDLNLPAPEDEHRESKFAFASKQQQQHGQKQQQQQQQQQQQQQTNLVFSSPALVDCHY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1161 353 SUPERFAMILY beta-beta-alpha zinc fingers 153 257 IPR036236 -
Tpr1g1161 353 SMART c2h2final6 154 176 IPR013087 -
Tpr1g1161 353 SMART c2h2final6 235 257 IPR013087 -
Tpr1g1161 353 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 19 353 - -
Tpr1g1161 353 MobiDBLite consensus disorder prediction 1 56 - -
Tpr1g1161 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 257 IPR013087 -
Tpr1g1161 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 154 181 IPR013087 -
Tpr1g1161 353 MobiDBLite consensus disorder prediction 35 49 - -
Tpr1g1161 353 Pfam C2H2-type zinc finger 234 260 - -
Tpr1g1161 353 Pfam C2H2-type zinc finger 153 179 - -
Tpr1g1161 353 ProSitePatterns Zinc finger C2H2 type domain signature. 156 176 IPR013087 -
Tpr1g1161 353 MobiDBLite consensus disorder prediction 314 341 - -
Tpr1g1161 353 PANTHER ZINC FINGER PROTEIN ZAT5 19 353 - -
Tpr1g1161 353 Gene3D Classic Zinc Finger 132 209 - -
Tpr1g1161 353 Gene3D Classic Zinc Finger 222 287 - -
Tpr1g1161 353 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1161 Tpr-Chr1 10482033 10484001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1161 22 353 C2H2 Transcription Factor Family AT5G04390 43.902 8.12e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1161 zf-C2H2_6 8.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1161 - - gmx:100819786 387.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1161 1 10482033 10484001 Tpr1g4312 1 50192718 50194097 ECH
Tpr1g4312 1 50192718 50194097 Tpr1g1161 1 10482033 10484001 ECH
Tpr7g3740 7 46291310 46292519 Tpr1g1161 1 10482033 10484001 ECH
Tpr4g1628 4 16637003 16638259 Tpr1g1161 1 10482033 10484001 ECH
Tpr1g1161 1 10482033 10484001 Tpr1g1161 1 10482033 10484001 ECH