Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1159 ATGGCGAGAAACAAGGTGAAACTTGCATTTATCTCCGATGAATCGAAAAGGAGAGCAAGCTACATTAAAAGAAAACGGAGTCTCATAAAGAAGGTGACCGAACTCACGACTCTTTGTGATGTTCCGGCTTGTGCTGTAATTTCGAGTCCTTTTGATTCCCACATAGATGTTTGGCCAAATCTAGAGGGAGCCAAGAATGTGATTGAGAGGTATCAAAATTCAACAGTCATAAATGAAAGCAAGAATGTCAGCCACCAAAGATTCATCATGCAAAGGACAGCTAAAGCCAGAGACCAACTAAAAAAGTTGAAACATGGCAATCGTGAGAAAGAGCTGAATCTTCTTATGTTCGAGTACCTGCAAAACAACAATGTCTCTTACGACCTAACTCCGGAAGAAGCGAAAGATTTAGATAAGGTTGTTGGAAAGATGCTGAAGGAAGTTGATAACAAGATTAATACACTTGATTGA 471 0.397 MARNKVKLAFISDESKRRASYIKRKRSLIKKVTELTTLCDVPACAVISSPFDSHIDVWPNLEGAKNVIERYQNSTVINESKNVSHQRFIMQRTAKARDQLKKLKHGNREKELNLLMFEYLQNNNVSYDLTPEEAKDLDKVVGKMLKEVDNKINTLD* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1159 156 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tpr1g1159 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tpr1g1159 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr1g1159 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr1g1159 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr1g1159 156 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Tpr1g1159 156 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr1g1159 156 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Tpr1g1159 156 PANTHER MADS BOX PROTEIN 3 154 - -
Tpr1g1159 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1159 Tpr-Chr1 10468121 10468591 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1159 3 155 Type I MADS-box Gene Family AT1G65300 36.364 1.40e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr1g1159 SRF-TF 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1159 - - gmx:100792290 168.318