Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1155 ATGGCTATCTATCAGGGTCCTGGATTCCGATTCCACCCTACGGACGAAGAAATCGTTTGTTTCTACTTGAAACGAAAACTCACCGGAAATTTACCTTCGTGTTTTGATCATCTCGCCGTTATCGATATCTACAAGTTCGAGCCCTGGGATCTTCCAAGTTTGTCTAAGTTGAAAACTAGGGATTTGGAATGGTACTTTTTCACTGGGCTGGACAAGAAGTATGGTAATAGTATCAGGACGAACCGTGCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGTTATCAAGAATGGGGAGGTTACTGTTGGAATGAAGAAGACTCTTGTTTATCACTTGGGTAGGGCTCCACATGGTGACAGGTCAAATTGGGTTATGCATGAATATAGGATGATTGATGAATCATTGGCAAAAGCTGGAGTGCAGGATGCATATGTTCTGTGTAGGATATTTGAGAAGAGTGGTTCGGGGCCGAAGAATGGGGAGAAATATGGGGCACCCTTTGTTGAAGCTGAATGGGAGAATGTTGTTGAAGGACAAGCGCTTCCTTTGCCGCCTGTTAACAACGAGGTTGTTTTGAAACAAGAAGTGTCTGCTCATGCTCCTGATGTCAATGAATGGGTGAACTCCTTGGTGGCTGTTGATAATGAACCTTTCAAACAACTGCCTGCTCCCGTTGATGATGATTTTGTTGAAACCCTTGACCTTGATCAGGATCTTGATACTAGTGACACAGTTGGAAGCGCTGATCTTCCATCAAACTACTGCTATGGGGAGTCTAGTAACCTTCCTCAGTATTCCCAAGCATTTATTAATGATAATAAGCAATTGGAAGCTGCTGTTGGTATTTATGATAATCAGGTTGATCAACCTGATAATATGGCTGATCTATATGGTGTGAATATTGACTCAGTGCAAGATGGATACAATGGTGAGACAACCCATAATGAGAATCCTCTGAATTTCAATTTTACATCTGAAGATCCAGATCTATATTTTGATGCCTCTGCTTATCTCACGGGTTTGGGTGAAGATTTGGGTGAAGAGTACCTTGAAACTAATGATATTAGGAATCTTAACGAAGTTGTTCCCTCTGAGATAGATCCTTCTGTTGCAGCAATGGTAGATGAGTATCTTACCTACCCTGATGAAGATATTTCCAAATATATATGCTTCGATTCTCCTATGAATGCAGGGAGTGAAAGCCTCATTGCCAACTATGGACAACCTTTGATTGATCAGAATCTGGAGGGCGAAACCAATGGTAGTTCCTTGCCAAACAAACATCTTTTTGAAGCACAGTCTAGCAATAAAGTTTTGCCAAACAACGATCTTGATGGATCAAACTGGGTTTCAGATGATGCAAATTATTTTGTGAAGCAAGCCAATAAATATTTAGCCCACATACCAGCTCCACCTGCATTTGCTTCAGAGTTTCCTGCTAAGAAGTTTGCTCTTGGGATGCATTCTGGATCAGAGGCTTCCAGTTCAGCTCATATAGCTGCAGGTATGATCAGCATAACAGACATTACTTTTAGAGGCAACACAATGGATTGGATGGTGGGCAAGAATGGAGGTTTTAACACCATAATGTCTACTGGGTTTCCCCAACCTGATGTTAACTCTCCTACTATGGTTCCTCTCTCTGGCTTGATCTGTAGCAAAACTGCACTTGTGTTATCACATGGTTGGCTTTTCTTAACGGGTTTCTCAGTTGTGATTCTTTCACTCAGTTTCAAGATTGGATGCTTCATGTATACGGGTAAATGA 1776 0.4172 MAIYQGPGFRFHPTDEEIVCFYLKRKLTGNLPSCFDHLAVIDIYKFEPWDLPSLSKLKTRDLEWYFFTGLDKKYGNSIRTNRATDRGYWKTTGKDRVIKNGEVTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDESLAKAGVQDAYVLCRIFEKSGSGPKNGEKYGAPFVEAEWENVVEGQALPLPPVNNEVVLKQEVSAHAPDVNEWVNSLVAVDNEPFKQLPAPVDDDFVETLDLDQDLDTSDTVGSADLPSNYCYGESSNLPQYSQAFINDNKQLEAAVGIYDNQVDQPDNMADLYGVNIDSVQDGYNGETTHNENPLNFNFTSEDPDLYFDASAYLTGLGEDLGEEYLETNDIRNLNEVVPSEIDPSVAAMVDEYLTYPDEDISKYICFDSPMNAGSESLIANYGQPLIDQNLEGETNGSSLPNKHLFEAQSSNKVLPNNDLDGSNWVSDDANYFVKQANKYLAHIPAPPAFASEFPAKKFALGMHSGSEASSSAHIAAGMISITDITFRGNTMDWMVGKNGGFNTIMSTGFPQPDVNSPTMVPLSGLICSKTALVLSHGWLFLTGFSVVILSLSFKIGCFMYTGK* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1155 591 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Tpr1g1155 591 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 197 - -
Tpr1g1155 591 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 214 586 - -
Tpr1g1155 591 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Tpr1g1155 591 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 6 197 - -
Tpr1g1155 591 PANTHER NAC DOMAIN-CONTAINING PROTEIN 53-LIKE 214 586 - -
Tpr1g1155 591 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Tpr1g1155 591 SUPERFAMILY NAC domain 5 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1155 Tpr-Chr1 10425132 10428394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1155 6 583 NAC Transcription Factor Family AT5G04410 37.851 2.20e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr1g1155 NAM 4.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1155 - - mtr:MTR_1g090723 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1155 1 10425132 10428394 Tpr1g1155 1 10425132 10428394 ECH