Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1153 ATGTCAGGAGAGGAAATTTGGCCACCAGTAGAAGAAGAATCTAACACATCTATGCCTCCATTTGATAACAGTAGTGGCTATAATTCAAGAACAGGAATTTATCACTCTCTTGTTAAGCTTGAAACCAAGCATGAAATCCCAACAAAGCGAGATCTTAACACTGCAAGTCTTGTGCTATCACAGTTCCCAACAGGAGAACTTGCTGATGCAAGAATTGCATTCATTGATTTAAGTACTAATAACAGTGTAACCTACGGCGAGATTCATCGATCAGCTTACTCCCTTGCAACAGCTTTGTTTCATGGACTTGAGCTTAGAAAAGGCGACGTGGTGTTTTTGTTGTCTCCAAACTCAATTTTGTACTCAACCATATGCTTAGCTGTGTTATCAGTTGGTGCAATTCTTACCACTGCCAACCCTCTTAATACTAAGTCGGAAATCGCGAAACAAGTACATGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGTTACACAAATTGGTTCCGACTGGAGTTCCTACAATTCTCACCTCCAGTTCATCCGGCGGAAAGTTTTTATCAGTTGAAGAGTTAATAGAAGGCTGCTACGGTTCACAAGAGTTACCGCATGTTCCTGTGGAACAATCAGACACTGCTGCTATACTTTACTCTTCAGGTACTACAGGAGTAAGCAAAGGTGTTGTTTTGACACATGCAAATCTCATAACCATAATGAAACTACTCTGCTGGTCTGCCGATGTATCTTCAGCTCAAGACGATGTTTTCCTAGCATTCATTCCAATGTTTCATATCTATGGACTGATGTTCTTTGGATTAGGGCTGTTGTGTGTTGGTGTTACGACAGTTTTGATGCAGAAATATGATTTCCAATCTATGCTTGTCGCTATCGAGAAGCACAAAGTTAATAACATACCAGCAGTGCCACCAGTGATCCATTCGTTGGTGAAACACGCAAGCAAAAATCAGTGTGACTTGTCTAGCCTGAGAAGAGTTGGCTCAGGTGCTGCACCTTTGAGTAAGGAAATGTCACAGGAGTTCAGAAAGATATTTCCTTCGGTTGAACTAAGGTCAGGTTATGGACTAACAGAAAGTTGTGGTGGAGCAACATTTTTCGGATCGGATAAAGATGCTGAAGCTCATCCAGAAGCATGTGGAAAGTTGATTCCAACTTTTTGTGCAAAAGTGATAGATATTGAAACAGGGAAGCCTTTGCCTCCTCACAAAGAAGGAGAGCTATGGCTGAAAAGTGCTACTATTATGAAAGAATATCTAGGAAATGTGGAGGCAACAACTGCAACAATTGATTCAGATGGTTGGTTAAAGACAGGAGATCTTTGTTATATCGATGAGAATGGAATTGTCTACATAGTTGAACGAATAAAGGAACTAATCAAGCACAATGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAAGAAACTGGACAGATACCAATGGCGTATGTGGTGAGAGCAGCTGGTTCTGAACTCTCAGAAGACCAGGTCATTCAATTTGTTGCAGGCCAGGTGGCTCCCTATAAAAAAGTGAGAAGGGTGAGTTTCATTGACAGTATTCCAAGGTCAGCTGCTGGCAAGATATTGCGGAAGGATCTTGTTGCTCAAAGCAAATATCAACTTATCTCTAAGTTATGA 1713 0.4151 MSGEEIWPPVEEESNTSMPPFDNSSGYNSRTGIYHSLVKLETKHEIPTKRDLNTASLVLSQFPTGELADARIAFIDLSTNNSVTYGEIHRSAYSLATALFHGLELRKGDVVFLLSPNSILYSTICLAVLSVGAILTTANPLNTKSEIAKQVHDSGAKLAISAPEELHKLVPTGVPTILTSSSSGGKFLSVEELIEGCYGSQELPHVPVEQSDTAAILYSSGTTGVSKGVVLTHANLITIMKLLCWSADVSSAQDDVFLAFIPMFHIYGLMFFGLGLLCVGVTTVLMQKYDFQSMLVAIEKHKVNNIPAVPPVIHSLVKHASKNQCDLSSLRRVGSGAAPLSKEMSQEFRKIFPSVELRSGYGLTESCGGATFFGSDKDAEAHPEACGKLIPTFCAKVIDIETGKPLPPHKEGELWLKSATIMKEYLGNVEATTATIDSDGWLKTGDLCYIDENGIVYIVERIKELIKHNGYQVAPAELESVLLSHPLIVDAAVIPVEDEETGQIPMAYVVRAAGSELSEDQVIQFVAGQVAPYKKVRRVSFIDSIPRSAAGKILRKDLVAQSKYQLISKL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1153 570 Gene3D - 41 463 IPR042099 -
Tpr1g1153 570 SUPERFAMILY Acetyl-CoA synthetase-like 69 561 - -
Tpr1g1153 570 CDD 4CL 46 558 - -
Tpr1g1153 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Tpr1g1153 570 Gene3D - 464 566 IPR045851 -
Tpr1g1153 570 Pfam AMP-binding enzyme 71 467 IPR000873 -
Tpr1g1153 570 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Tpr1g1153 570 PANTHER AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN-RELATED 19 569 - -
Tpr1g1153 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 569 - -
Tpr1g1153 570 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1153 Tpr-Chr1 10412474 10414719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1153 59 566 Monolignol Biosynthesis Gene Families AT1G20500 43.714 2.65e-149 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1153 K10526 - gmx:100783104 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g4140 1 47705163 47711345 Tpr1g1153 1 10412474 10414719 ECH
Tpr1g1153 1 10412474 10414719 Tpr1g1153 1 10412474 10414719 ECH