Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1140 ATGACAGATTTTGAACCTCTACAGCAGAAACCTGAATCTGCTGATACCACCCATGCTGAGTTTGACCATGGATTGGAGGACTATATGCGTGGTCACTTGGATGATTGTATGTCATTTGCTTCGTGTAGCTCTTCCCGGGCACAGGATGATGAGGATGATGAGAGTGATCAGCTGGTTAGGAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTAGCGGAGTCATCAGCAGCGCGGAGGCGCCATTCGCGAATTTTGAGCAGATGGGCTGCCAGGCAGGCGCAGGAGATGATAACTACTATTGAAAGGAGGAATCGAGAGTCAGAGTTGATGGCGCTTGCAGGGTTACATACGGTGTCTATGTTGGACTCTTCTTTTTTGAGGGGGTCGCAGTCTCCTACTTCTGGCCAGGAGGGGGCTGTGGAGAGACCGAGCACTCAGGCATCTTCCATTCTGCAGATGTGGCGCGAATTAGAGGATGAACATTTGTTGAATCGGGCACGTGAAAGGATGAGGGAAAGGTTGAGGCGGCAGCGGCAGAGGAGTTCTTCTGATGCTAATACCAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATAGAGGGAGTTTGGGGGATGCAAGTGAAAGTGAAAATGATTATGGTACCTGGTCACATGATCAGATTGGATCACGTAATGCACATGTGAATCATAGTGTATCTAGCAGGGAGCAATCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAAATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCGTTCATCTAATGTGAGCCAGAGAAATAACAACCACAGATCAGAATGGCTTGGAGAAACAGAGCGTGAGAGGGTGAGAATTGTCAGGGAATGGGTGCAAATGACTAGCCAACACAGAGGTTCACGTGGGAGCCGTAGGGATGCTCAAGTAAGTGAATCTGCTCAAGCTGATCGGACCCGTGATATGGCAGCTGACCATGATGAGCGTCAGCCAGAGCATGTTCGGCGGGACATGTTGAGGTTGCGTGGAAGACAGGCTCTAGTTGATTTGCTTGTTAGGGTAGAAAGGGAAAGACAAAGGGAGCTGCAGGGTTTGTTGGAGCATCGAGCTGTTTCTGATTTTGCTCATCGCAATCGTATTCAGTCATTGCTCAGAGGTAGATTCCTTAGAAATGAAACTGTTGAAGATGAGAGGCCTCCTTCTACAGCTGCAAGTGAATTAGTTCAATTAAGGCAACGACACACCGTCTCCGGTATAAGGGAGGGGTTTCGCTCAAGATTAGAAACTATTGTTCGTGGTCAAGCAGGCACCAATCCTGATACCACATCAAATATTAGCATTGATGAAACAAGACAAGATGAGAGCCAATCAAACACTCTCATAGATGATCAACAAGAAAGTTATGACCAAGAGCAGATTAGGAGCCAGGAAGCTGATGCACGTCAGTTGCCTAATCAAACAGGAACTTTGGAGAGTAGCACAAGTGAAAATATTAGTTGGCAAGAAGCTAGTAATCAAGGAGGGGATTGGCAAGAACAGATTGCTGCAAATGAGGGAGGAAACTGGCCGCAGAGAGTTAATGGTCCATTCAATCAGCTCAGAGATGGAATGGAAGCCAGTGACTGGCCACAGGAAACTCCCAGAAATTCAGCTGGGGAAGATCCTGATCCACAGGAGGCTCAAAGAATTTGGCAGGACGATAACACAAGGGAAGCTGTTGGTAATTGGTCTGAAGGACCTTCTGCAGCCTCAAGGAATCGCCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCATCCTCCTGATGATGATAATGTGTACAGTATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTATCTAACCTTCTACGTAGTGGTTTCCGTGAAAGTCTGGATCAACTAATTCAGTCATATGTTGAAAGGCAAGGTCATGCACCAATTGACTGGGATTTGCATCGAAACTTGCCTACAACGACTCCTGCCTCACCTGAACGAGACCCTGATCAGCAGGGGGATGAACATAATGAGGGTCAGCGTGAAGCCATCAACAGACCTTCACTGGTGTTGCCTTCTCCACCAGTGCCCCCGCCACAACCACTGTGGCACCAAGATTTGCACCAAACTGGATGGTCTCGTCATACCATGCACCGTTCTGAAATTGAATGGGAGATAATGAATGATTTAAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCCTGCATGGATATGCAACTGGAATTGCAGAGATCTGTCAGACAGGAGGTCTCTGCAGCTCTGAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTAAACAAAGGAACTTGCTGTGTTTGTTGTGATAACCACATTGATTCGCTTTTGTACAGATGTGGACACATGTGCACATGTTCAAAATGTGCTAATGAGTTAATCCGTGGAGGAGGTAAGTGTCCGTTATGCCGAGCACCAATTGTTGAGGTGGTCCGAGCATATTCCATATTGTAA 2568 0.4716 MTDFEPLQQKPESADTTHAEFDHGLEDYMRGHLDDCMSFASCSSSRAQDDEDDESDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGAVERPSTQASSILQMWRELEDEHLLNRARERMRERLRRQRQRSSSDANTNVSSTMSDSRGSENRGSLGDASESENDYGTWSHDQIGSRNAHVNHSVSSREQSPDLGEVERERVRQIVRGWMESGISDRSSNVSQRNNNHRSEWLGETERERVRIVREWVQMTSQHRGSRGSRRDAQVSESAQADRTRDMAADHDERQPEHVRRDMLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNETVEDERPPSTAASELVQLRQRHTVSGIREGFRSRLETIVRGQAGTNPDTTSNISIDETRQDESQSNTLIDDQQESYDQEQIRSQEADARQLPNQTGTLESSTSENISWQEASNQGGDWQEQIAANEGGNWPQRVNGPFNQLRDGMEASDWPQETPRNSAGEDPDPQEAQRIWQDDNTREAVGNWSEGPSAASRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHRNLPTTTPASPERDPDQQGDEHNEGQREAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHTMHRSEIEWEIMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVNKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELIRGGGKCPLCRAPIVEVVRAYSIL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1140 855 MobiDBLite consensus disorder prediction 301 339 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 545 565 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 42 79 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 673 687 - -
Tpr1g1140 855 ProSiteProfiles Zinc finger RING-type profile. 803 842 IPR001841 -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 438 472 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 306 339 - -
Tpr1g1140 855 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 855 - -
Tpr1g1140 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 853 IPR013083 -
Tpr1g1140 855 Coils Coil 732 752 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 127 148 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 172 248 - -
Tpr1g1140 855 CDD mRING-HC-C3HC5_NEU1 802 842 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 667 694 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 438 514 - -
Tpr1g1140 855 Pfam Zinc finger, C3HC4 type (RING finger) 800 847 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 53 79 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 182 241 - -
Tpr1g1140 855 MobiDBLite consensus disorder prediction 483 514 - -
Tpr1g1140 855 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 855 - -
Tpr1g1140 855 SUPERFAMILY RING/U-box 802 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1140 Tpr-Chr1 10328249 10335037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1140 785 849 C3H Transcription Factor Family AT3G06140 37.879 1.17e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1140 - - gmx:100784174 1395.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1140 1 10328249 10335037 Tpr1g1140 1 10328249 10335037 ECH