Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1131 ATGAACTGTCTTCAGAATCTTTCAAGATCCTCTGTTTTACCATTCCATACACTCGTTGCTCCTCCTGCTCGCAATCACCAAAACACTTGTTCTTTATCCATGCTATTCATCCGTAAATCTCATCACAATCGAACCATGATACTCAAGGCTACTTCCGGTTCTATACCCAGTGCAGAGACAAGCAGCTCTGATGTCGAGGAGGAGGTAAAGTCTGAGACATACAGTAATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCACGAATTAGGAATGAACTACAACTTCATCAGACCAGACTTGATTGTTGGATCATGCTTGCAGACTCCTGAAGATGTTGATAAGCTGCGTAAAATTGGAGTGAAAACTATATTTTGCTTGCAACAAAATCCTGACCTAGAATATTTTGGAGTTGACATCAATGCCATACGAGATTATGCCAAGACATTTGATGACATCCAACACCTGCGTGCTGAGATAAGGGACTTTGATTCATTTGATTTACGGAAGCGGCTTCCAGCTGTAATTAGCAAATTATACAAGGCAATCAAATCCAATGGGGGTGTGACATATATACACTGTACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTCAATGATGCTAATGCACTACTTCTGAGCAAAAGGTCATGCTTTCCGAAACTGGATGCCATCAAAAGTGCTACAGCCGATATTCTTACAGGCCTTAGTAAGAAGCCTGTCACTTTGTCGTGGGGACACAACAATTGCTCTACAGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAGTGCCCTTAGATTTTGACGACAAACGGGGTTCATGGTTTCTCGAGAAGGAAATGTTTGAAGGGCGCTACGAGTACAAGTACATTGTTGATGGGGAATGGACGTGCAATAACGATGAGCTTGTATTATCTCCCAACAAAGACGGTCATGTCAACAATTTTATCGAAGTTATTGATGATGCGGACGGTGACCGTGCCTCCCTTCGGGGTAGAGTGACTGGTGATGATCCTGATCTCACAAAGGATGAACGAATCAAAATAATAGAGTTTCTGGAAGCCTTTCCCGATGAGGATCTCTGA 1134 0.4295 MNCLQNLSRSSVLPFHTLVAPPARNHQNTCSLSMLFIRKSHHNRTMILKATSGSIPSAETSSSDVEEEVKSETYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQNPDLEYFGVDINAIRDYAKTFDDIQHLRAEIRDFDSFDLRKRLPAVISKLYKAIKSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNDANALLLSKRSCFPKLDAIKSATADILTGLSKKPVTLSWGHNNCSTVEISGLDIGWGQRVPLDFDDKRGSWFLEKEMFEGRYEYKYIVDGEWTCNNDELVLSPNKDGHVNNFIEVIDDADGDRASLRGRVTGDDPDLTKDERIKIIEFLEAFPDEDL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1131 377 MobiDBLite consensus disorder prediction 52 73 - -
Tpr1g1131 377 SMART dsp_5 95 245 IPR020422 GO:0006470|GO:0008138
Tpr1g1131 377 Pfam Glycogen recognition site of AMP-activated protein kinase 254 337 IPR032640 -
Tpr1g1131 377 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 252 IPR020422 GO:0006470|GO:0008138
Tpr1g1131 377 SUPERFAMILY E set domains 253 336 IPR014756 -
Tpr1g1131 377 CDD E_set_AMPKbeta_like_N 254 335 - -
Tpr1g1131 377 Pfam Dual specificity phosphatase, catalytic domain 138 233 IPR000340 GO:0008138|GO:0016311
Tpr1g1131 377 CDD DSP_laforin-like 94 241 IPR045204 GO:0019203|GO:0046838
Tpr1g1131 377 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 230 IPR000387 GO:0016311|GO:0016791
Tpr1g1131 377 Gene3D Protein tyrosine phosphatase superfamily 88 368 IPR029021 -
Tpr1g1131 377 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 237 IPR029021 -
Tpr1g1131 377 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 375 - -
Tpr1g1131 377 Gene3D Immunoglobulins 250 340 IPR013783 -
Tpr1g1131 377 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 375 IPR030079 GO:0005982|GO:0007623|GO:0019203
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1131 Tpr-Chr1 10228344 10235021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1131 94 371 Protein tyrosine phosphatase (PTP) family AT3G52180 68.345 9.20e-146 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1131 - - mtr:MTR_1g090867 649.047