Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1129 ATGGAGGAGACTCACGAAAACGACGCTCTTCCAAATAACAGACCTTCCACTGAACAGGACATTACTGATGAGTTAGAACTAAGATCAAAGAAGTATCTTAGAGGAGAAGGTGCTGATTTGAAGGGTTTAAAGGATAAAAAACTCAGGAGTCAGATAGTTGCCAGAGAGAAATTATATGGACAAACTGCAATAGCTGCTGCCAAGACTGAGAAATGGATTATGCCTAGCGAGGCGGGTTTTATCGTGCCTGAAGGCATAGAAAAGACTGACACGATCAAGCAGGAGGCAATAGCCCGTGAAGTAGATATCTCAAGCTTACGGAACCAATATGATATTACTTTACCAGAGTTTGGTCCATATACTCTAGACTTTACTTCAAGTGGCCGGTATATGGCTCTTGGCGGCCGTAAGGGCCACCTAGCAATTGTAGACATGATGAATCTGAGCCTGATTAGAGATTTTCAGGTAAGAGAAACTGTGCGTGATGTTGTATTCTTACATAATGAGCTCTTCTTTGCTGCTGCTCAGAAAAAGTATTCTTACATCTATAGTCGTGAAGGCACAGAGCTTCACTGTCTAAAGGAACATGGTTCAGTGTTGAGGCTTCAATTTCTGAAAAACCATTTTCTGTTGGCTTCTACCAACAATTATGGGATGCTTCTTTATCAGGATGTTACAATGGGTGCCATAGTTGGGAAATATCGAACTGGTTTAGGACGTACAAATGTGATGCAAGTAAACCCTTACAATGCAGTTGTTTCTTTAGGTCACTCAGCCGGTACAGTTACTATGTGGAAGCCAACCAGTTCTTCCCACCTTGTCAAGATGCTATGTCATCAAGGACCAGTAACGGCACTGGCATTTCACTCAAATGGCCACATAATGGCCACTGCTGGGGTAGATAAAAAAATTAAGCTTTGGGATTTGAGGAAGTATGAGGCTTTCCAAACATTACCAGGCTATGCAAATACTTTGGAGTTTAGTCAAAAAGGCTTGCTTGCTTGTGGTACTAATTCATATCTCCAGGTTTTGAGGGATGTTTCTGGTACACAGAACTATTCAAGGTACATGACTCATTCAATGGCAAAGGGTTACCAGATAGGAAAATTAGCTTTTCGACCATACGAAGATGTTCTATGTATAGGGCATTCAATGGGATATTCTAGTATTCTTATTCCGGGAGCAGGAGAACCCAACTTTGATTCATGGGTTGCAAATCCATTTGAAACACCTAAACAAAGAAGCCAAAAGGAAATAAAGGCTCTTCTTGATAAACTTCCACCTGAGACAATCATGCTGGATCCAAGCAAGATCGGTACAGTAAAACATACTACTAAAGAGAAGCTAACTAAGAAAGAGAGAGAGGAAGAGATGGAAGCTGCGATTGAAGCTGTCAAGAGCAAAAAACTGAAAAAGAAAACAAAAGGAAGAAGTAAGGCAGGTAAAATAATGCCGAAAAAGCAAGATGCAATTGCCAATGCAAAGAGGCCTTTCTTGGAGCAGAAAATTGCAGAAGAGAAAAACGAATCCAGAAAGAAACAGAAAACTAACGAGGGAGTTGACCTACCAAAATCTTTACAGAGGTTTGCTCATAAGAAACCATCATCATAA 1611 0.4072 MEETHENDALPNNRPSTEQDITDELELRSKKYLRGEGADLKGLKDKKLRSQIVAREKLYGQTAIAAAKTEKWIMPSEAGFIVPEGIEKTDTIKQEAIAREVDISSLRNQYDITLPEFGPYTLDFTSSGRYMALGGRKGHLAIVDMMNLSLIRDFQVRETVRDVVFLHNELFFAAAQKKYSYIYSREGTELHCLKEHGSVLRLQFLKNHFLLASTNNYGMLLYQDVTMGAIVGKYRTGLGRTNVMQVNPYNAVVSLGHSAGTVTMWKPTSSSHLVKMLCHQGPVTALAFHSNGHIMATAGVDKKIKLWDLRKYEAFQTLPGYANTLEFSQKGLLACGTNSYLQVLRDVSGTQNYSRYMTHSMAKGYQIGKLAFRPYEDVLCIGHSMGYSSILIPGAGEPNFDSWVANPFETPKQRSQKEIKALLDKLPPETIMLDPSKIGTVKHTTKEKLTKKEREEEMEAAIEAVKSKKLKKKTKGRSKAGKIMPKKQDAIANAKRPFLEQKIAEEKNESRKKQKTNEGVDLPKSLQRFAHKKPSS* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1129 536 Coils Coil 451 471 - -
Tpr1g1129 536 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Tpr1g1129 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Tpr1g1129 536 PANTHER BNAANNG36350D PROTEIN 10 532 - -
Tpr1g1129 536 SUPERFAMILY WD40 repeat-like 108 384 IPR036322 GO:0005515
Tpr1g1129 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Tpr1g1129 536 MobiDBLite consensus disorder prediction 467 536 - -
Tpr1g1129 536 SMART WD40_4 186 223 IPR001680 GO:0005515
Tpr1g1129 536 SMART WD40_4 270 308 IPR001680 GO:0005515
Tpr1g1129 536 SMART WD40_4 105 144 IPR001680 GO:0005515
Tpr1g1129 536 SMART WD40_4 147 184 IPR001680 GO:0005515
Tpr1g1129 536 MobiDBLite consensus disorder prediction 499 519 - -
Tpr1g1129 536 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Tpr1g1129 536 Gene3D - 105 390 IPR015943 GO:0005515
Tpr1g1129 536 PANTHER WD-REPEAT PROTEIN BING4 10 532 IPR040315 -
Tpr1g1129 536 SMART BING4CT_2 355 435 IPR012952 -
Tpr1g1129 536 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g1129 536 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1129 118 331 U-box Gene Family AT1G04510 25.328 1.92e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1129 K14768 - gmx:100802940 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1129 1 10215501 10219865 Tpr1g1129 1 10215501 10219865 ECH