Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1109 ATGGACTTGCCGAAACACCGTCCCACACCAACTACCTCTTTAAGGGACGCATCAGACTCCTCCACTGGTAGCTGGGACGCTCTCGAATGGACCAAAATTGAGCCAATTGCGCGTTTCGTCTCTCCTGCGAATCTCGATTTCTTGCTCGATGATGAACAAGTTGTTGCCGAAGGGCATGGTGTTGTTCTTGTCAATACAGATGATGCAGGTGTCTTGATTGTAACAAACTTTCGTCTAATATTTTTGAGTGAGGGAACAAGAAAAGTTATTGCCCTTGGAACAATACCACTAGCAACTATTGAGAAGTTTAACAAGACAGCTGTAAAGGTTCAGTCAAATACTCATCAATCAGACAAGACACCAACACAAAGACTTCTGCAGGTGATTGGGAAAGATATGAGAATTATAGTCTTTGGTTTTAGGCCTCGTACAAAACAGAGACGTGCAATATATGATGCACTACTGAAGTGTACGAAGCCACCAGTATTATGGGATCTTTATGCTTTTACATCTGGGCCTTCCAGTTTCAAGAACACCTCTCCAATGGTGCGTTTATTGGATGAGTATTTTCGACTTATTGGCAAAGCTTCTCATCGTGCTTCAATGGACATGATTGAAAGTGGGTCCTTCACCTTGTCAAATGACTTATGGAGAATAAGTAGTGTGAATTCCAGTTATACAATGTGCCAGAGTTATCCATTTGCTTTGGTTGTTCCAAAGAGCATTAGTGATGATGAAGTACTCCAGGCTTGCAAATTCCGTGCAAGATGCCGACTGCCTGTAATTTCTTGGTGTCATCCTGTTACTGGCGCAGTTCTTGCACGTTCTTCCCAACCTTTAGTTGGTCTCATGATGAATATGAGGAGCAACATGGACGAAAAACTTGTGGCTGCACTTTGCAGCAACCGTGATGGCTCAAGGAGAAAGCTATATATCGCTGATGCGAGACCAAGGAAAAACGCATTAGCTAATGGAGCCATGGGAGGTGGTTCAGAATCATCATCAAACTATTTTCAATCTGAGATAATCTTTTTTGGTATAGACAACATTCATGCAATGAGAGAGAGCTTTGTTCGGCTCCGAGAATTCATGGACACTCATGGCAGAACATCATCAGATGGAATGTCATCTTTTTTGAGACATGGCGGGTCAATATGGGGTGGTGGCAATTTAAGTAGTATGTCTGCTTCAGTATCAACCCTTGGGGACAGTGGATGGTTATTGCATGTTCAGAATGTCTTAGCTGGTGCAGCTTGGATTGCTGCCCGTGTTGCTATGGAAAAGGCTTCTGTTCTTGTACATTGCAGTGATGGATGGGATAGGACAAGCCAGTTAGTTTCACTTGCTAATTTGTTGCTTGATCCATATTATCGGACATTCAGAGGGTTTCAGGCACTTGTTGAAAAAGACTGGCTAGCATTTGGTCATCCATTTTCTGATCGTGTGGGAACACCATCTATCTCTGGAAGTGGCAACATGTCTTTCGAGTTACCTAGGCAGCAGTCTTCAACTAGCATTATCCCATCATCACCAATGCGCCAGCCATCAGGGACATTCGTGTCTCAACCTCCAGTTTCATCTCATGCACATAACTCAAACAACTACTCTCCCATTTTTTTGCAGTGGGCTGATTGTGTGTCACAACTGCTGCGGATGTATCCTTTTGCTTTTGAGTTTTCTGCGGCTTTCCTGGTGGACTTCTTAGACTGCATGCTTTCTTCTCGCTTTGGAAACTTCTTCTTTAATAGTGAGAAGGAGAGGCTGCAGTGCAATGTGTTTGAAAGTTGTGGATGTTTGTGGGCATACTTGGCTGACAGGCGGACATCAGAAGGAAGTAGTACCCATGCACATTGTAATCCCTTTTATGATCCACTGAAGTACAGCGGTCCTCTTCTTCCCCCAGCAGCAGCGTTAGCCCCAACTATATGGCCCCAATTCCACCTTCGTTGGGCCTGCCCAGAAGAAGCACAGGGTGGAGAGCTTGAAGCACAATGTCGGAAGATAATACTGAAAAACTCTGAGATGCAGAAGGCTAAAGAAGTGGCAGAAAGGAAAGCTAGAGAATATACAATTGCTATGGAATCGTTGAATGCTGAATTACGACGTGAGAAACTGTTAAACATCTCATCTATGAACACGGCCAAGAGGATAACCAAAGAAAATACGGACATAAAGCGTGCAATTCGATCAATTGGGTGCAAGATTCACATTTCTAGTAGTGGTGATTGCATTGTTGACATTGAAAACAACCCAGTGGAAGCACGTCCAAACTTGTATTGTTCATCTAGGCAAGGATCTAGGCAAGGATCTAGGCAAGGATCAAGGCAAGGATCAAGTAGTGCTCTGATTAATGATAAAAAGGATCTATCTGTTTCTGTAACAGAAGATGACGATGATGATGATGATGATGGGAACAATGTTATTGGTCGAATTTGTGAATCTCTATGCCCATTTCGCACCGGAGATGGAGGCTGCAGGTGGCCAAATGGTGGTTGTGCTCAACTAGGTAGCCAGTTTGTTGGTTTGAAAGCAAATTTTGATGCATTTGACCAACTTTCGATTGATGACAGTTATTTCAAGCCCAAGTGA 2589 0.4349 MDLPKHRPTPTTSLRDASDSSTGSWDALEWTKIEPIARFVSPANLDFLLDDEQVVAEGHGVVLVNTDDAGVLIVTNFRLIFLSEGTRKVIALGTIPLATIEKFNKTAVKVQSNTHQSDKTPTQRLLQVIGKDMRIIVFGFRPRTKQRRAIYDALLKCTKPPVLWDLYAFTSGPSSFKNTSPMVRLLDEYFRLIGKASHRASMDMIESGSFTLSNDLWRISSVNSSYTMCQSYPFALVVPKSISDDEVLQACKFRARCRLPVISWCHPVTGAVLARSSQPLVGLMMNMRSNMDEKLVAALCSNRDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIIFFGIDNIHAMRESFVRLREFMDTHGRTSSDGMSSFLRHGGSIWGGGNLSSMSASVSTLGDSGWLLHVQNVLAGAAWIAARVAMEKASVLVHCSDGWDRTSQLVSLANLLLDPYYRTFRGFQALVEKDWLAFGHPFSDRVGTPSISGSGNMSFELPRQQSSTSIIPSSPMRQPSGTFVSQPPVSSHAHNSNNYSPIFLQWADCVSQLLRMYPFAFEFSAAFLVDFLDCMLSSRFGNFFFNSEKERLQCNVFESCGCLWAYLADRRTSEGSSTHAHCNPFYDPLKYSGPLLPPAAALAPTIWPQFHLRWACPEEAQGGELEAQCRKIILKNSEMQKAKEVAERKAREYTIAMESLNAELRREKLLNISSMNTAKRITKENTDIKRAIRSIGCKIHISSSGDCIVDIENNPVEARPNLYCSSRQGSRQGSRQGSRQGSSSALINDKKDLSVSVTEDDDDDDDDGNNVIGRICESLCPFRTGDGGCRWPNGGCAQLGSQFVGLKANFDAFDQLSIDDSYFKPK* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1109 862 Coils Coil 672 699 - -
Tpr1g1109 862 ProSitePatterns Tyrosine specific protein phosphatases active site. 433 443 IPR016130 GO:0016311|GO:0016791
Tpr1g1109 862 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 211 651 IPR029021 -
Tpr1g1109 862 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g1109 862 Gene3D - 59 158 IPR011993 -
Tpr1g1109 862 PANTHER MYOTUBULARIN-RELATED 16 861 IPR030564 -
Tpr1g1109 862 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 16 861 - -
Tpr1g1109 862 SUPERFAMILY PH domain-like 48 170 - -
Tpr1g1109 862 SMART gram2001c 37 107 IPR004182 -
Tpr1g1109 862 Pfam Myotubularin-like phosphatase domain 167 587 IPR010569 -
Tpr1g1109 862 MobiDBLite consensus disorder prediction 761 781 - -
Tpr1g1109 862 CDD PTP-MTM-like 257 548 - -
Tpr1g1109 862 ProSiteProfiles Myotubularin phosphatase domain. 194 647 IPR010569 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1109 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 66.782 0.0 1151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1109 K18081 - gmx:100781842 1375.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1109 1 9972315 9983810 Tpr1g1109 1 9972315 9983810 ECH