Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1101 ATGAACAACACTAACCCATATGGTTTACCGGAAGATCTCCGCCGGTTAATATCATCATCATCATCATCAAGAAACACCAATACACAACATCTATCTGCAGCAGAACCACCGTGTCAATACGGTGGTTCTGCTTCTGGTTCTTTTCCACCACCACCACAAAATTACTGCTATGACCCTCCTCCTATCATTGTTGGTGATGTTTTCTACCCTCGTAGTAGTAACAACACCTTCCCTCATAACTATGACTACTCTTCTACTGTTAACCCTACTACAACTATTTCTACTGCTAATTCAGATCATGCTACTGCTTCTGCTTCAGCATTTTGTGTTGGTTTAGAAACTTGTTCTATAGATATTAATAATAAAGGATGGTTTGGTAATTTTGATTCTTCTAACAATAGATGGCCTAGACAAGAAACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAAAAAGCACCCTTATGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAAAAGTTTGAGAATTTGTACAAGTATTACAAGAAAACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAACACTATAGATTCTTCAGACAGCTTGAAGCAATATGTGGAGAAGCCTCAACTTCAGACAAAAATACACCTCATGTTGATGCTGTTGTTGCTACTCAAACTCCAAATTTCACAATCAACCAAGAAAATATCAATGGTGTAGTTGATCATAATTTGATCAATAACCTCAAGTACTCGGAGAGTCTAAGTTTCTCGAATTCATCTGAATTCGAGACATCTTCATCTGAAAACAATGACGAGGATCTCTCGGCCATTGCACACACGATGAAGACATCAAAGCAGAAAGGGGTGGATAAAAGTGATAGGAGGGGGAGGAAAAGTTGGAGAGGTAAAGTGGAGGAGATTGTTGATTCTCATATGAAGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTAAGTGTTGTTGAACAAAGAGAACAAGAGATGGCTTTAAGAGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCTTGGGTTGAAGCAAGAGATTCAGCATTGTTAGAAGTTGTAAGAAAACACATTGGAGTTGAAGCATCAAGTAAGAATGAAAGTAATACAAATTATGAACACCCTTTTGGAAATGTGGATCATGGATGGACAGAAATGGAGATTTCAAGTTTGATACAATTAAGGACTAGTTTTGAACATCAAGTAAGAGAAAAAGGGTATTTGGATGATTGTGTTTGGGATGAAATAGGTGAAAAAATGGTGTATATGGGATTTAATAGGAATGGTGTTGAGTGCAAGAAAATATGGGATGAGATTAGTATGTCTCTAAGAAGGTCAGTGGATTGTGGAGTCAAAATTACAAGACCTTGGTGTTTGGGACTTAAGGTGACAGATGATGATGACCTTTGA 1530 0.3725 MNNTNPYGLPEDLRRLISSSSSSRNTNTQHLSAAEPPCQYGGSASGSFPPPPQNYCYDPPPIIVGDVFYPRSSNNTFPHNYDYSSTVNPTTTISTANSDHATASASAFCVGLETCSIDINNKGWFGNFDSSNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEASTSDKNTPHVDAVVATQTPNFTINQENINGVVDHNLINNLKYSESLSFSNSSEFETSSSENNDEDLSAIAHTMKTSKQKGVDKSDRRGRKSWRGKVEEIVDSHMKKIIETQDAWMERMLSVVEQREQEMALREEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGVEASSKNESNTNYEHPFGNVDHGWTEMEISSLIQLRTSFEHQVREKGYLDDCVWDEIGEKMVYMGFNRNGVECKKIWDEISMSLRRSVDCGVKITRPWCLGLKVTDDDDL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1101 509 ProSiteProfiles Myb-like domain profile. 127 192 IPR001005 -
Tpr1g1101 509 PANTHER - 86 489 - -
Tpr1g1101 509 Pfam Myb/SANT-like DNA-binding domain 133 220 IPR044822 -
Tpr1g1101 509 Pfam Myb/SANT-like DNA-binding domain 422 487 IPR044822 -
Tpr1g1101 509 Gene3D - 423 485 - -
Tpr1g1101 509 Gene3D - 135 197 - -
Tpr1g1101 509 MobiDBLite consensus disorder prediction 295 315 - -
Tpr1g1101 509 CDD GT1 133 199 - -
Tpr1g1101 509 MobiDBLite consensus disorder prediction 300 315 - -
Tpr1g1101 509 ProSiteProfiles Myb-like domain profile. 423 480 IPR001005 -
Tpr1g1101 509 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL-LIKE 86 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1101 Tpr-Chr1 9888965 9892710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1101 134 495 Trihelix Transcription Factor Family AT5G03680 41.063 1.19e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr1g1101 Myb_DNA-bind_4 4.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1101 - - gmx:100784522 548.895