Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1099 ATGATTTCATCTGGAATCAACTTGGTTATGACTATAATTGGTTTTGCTGTTAGCACAATGTTCATTGTTTTTGTCTGCACAAGACTCATTTGTGCTCGAATTCACTTGAATGCTTCTAGAAGATCTTTTCTCATTGCTTCTAGATCCAATCTCAGCTTGATGGAAAGGGGTTGTCAAGGTCTTGAACGCATTGATGTAGCTAAATTTCCAGTTAAGAAGTACAGTGACAAGTTTTTTGCTGCTGGAGAAAATTCTCAATGCACAGTCTGTCTCTCAGAGTACCAAGGTGAAGATACACTGCGTATCCTCCCTCATTGTGGACACTCCTTCCATATGGCCTGCATAGACTTATGGCTGCAGCAGAATGCCACTTGTCCTGTTTGTCGAATATCATTGCGTGAATTTTCAGAGAGAACGCGATCAATGCAACCTGTATATAGCTCCTATTACGGGATGGAGTCCTTTGACACTCATCATTATCACTGTATCATGACCGATAATGGATTATTGACAAGAACCTCTGATAACCGTGGGGTTAACCCTATACAAGAGGATCACTTTCCATCTGAGGATGGTGGAGCAGTTGACATGGACAGCATCACCTCCTTAAGTCAGGGTGATTTCATTAAAGATGAAGAGAAGAAGCATGTCGAGAGCCCATCAAATTTATAG 672 0.4137 MISSGINLVMTIIGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLSLMERGCQGLERIDVAKFPVKKYSDKFFAAGENSQCTVCLSEYQGEDTLRILPHCGHSFHMACIDLWLQQNATCPVCRISLREFSERTRSMQPVYSSYYGMESFDTHHYHCIMTDNGLLTRTSDNRGVNPIQEDHFPSEDGGAVDMDSITSLSQGDFIKDEEKKHVESPSNL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1099 223 Pfam Ring finger domain 86 129 IPR001841 -
Tpr1g1099 223 PANTHER OS11G0150450 PROTEIN 1 222 - -
Tpr1g1099 223 SMART ring_2 87 128 IPR001841 -
Tpr1g1099 223 CDD RING-H2_PA-TM-RING 86 129 - -
Tpr1g1099 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 134 IPR013083 -
Tpr1g1099 223 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Tpr1g1099 223 PANTHER OS11G0150450 PROTEIN 1 222 - -
Tpr1g1099 223 SUPERFAMILY RING/U-box 81 135 - -
Tpr1g1099 223 MobiDBLite consensus disorder prediction 174 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1099 Tpr-Chr1 9871083 9873489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1099 13 132 C3H Transcription Factor Family AT4G10150 37.097 1.42e-21 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1099 - - aprc:113873018 387.497