Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1080 ATGGAAGTTCTGTCTCTTTCAGTTACATTCACCAAATTTCAAACCTTTCCCTCTCTCAAACCAAACAAAACCCCAATTCACCAACTTCCAATAAACACAACACTACCCACAAAAAAAAATCACTCTTTTTCTTGTTCCATTTCATCTTTTACTAGAAGAATTTCAGCAACAAGTAACCAATCATCATCAACTTCACAAACCGATATGTTGTTGTTCCCTCCTGGAAATTCAAAGCATTGGGTTGTTAGAATGGATAAACCTGTTGTTGGTGTTGTTACCAAAGCTCAAATTGTTGATCATTATGCTCAAATTTTGACCAAAGTTATGGGAAATGAGAAGGATGCACAAATGTGTATATATCATGTTTCTTGGAAAACCAACTTTGGTTTTTGTTGTGAACTTGATGAGGATTGTGCAAATGACCTTGCTGGTGTTCCTGGTGTCTTGTCAGTTCAGCCAGATGACAATTTTGAGTCAGAAAATAAAGATTATGAAGGTAGAAACCTAGAAAATAGTTTGAATAAGACAAAATCTTCTGAAGCAAGTAAGGAAGTTTCGGTGGAAACAAAGAAACTTTTTGTGACAGGGCTATCATTTTATACATCTGAGAAAACCTTACGTGCCGCATTTGAAGGCTTTGGTGAGCTTGTTGAAGTTAAAGTTATCATAGATAAAATTTCAAAAAGGTCCAAGGGCTATGCATTTATTGAATACACCACCGAGGAGGCTGCAAGTGCAGCACTCAAAGAGATGAATGGCAAGATTATTAATGGCTGGATGATAGTGGTAGATGTTGCCAAGCCTACTCCTCCAAGATACAATACGGGTCGAGCCAGACCATCTGCTTGA 849 0.3757 MEVLSLSVTFTKFQTFPSLKPNKTPIHQLPINTTLPTKKNHSFSCSISSFTRRISATSNQSSSTSQTDMLLFPPGNSKHWVVRMDKPVVGVVTKAQIVDHYAQILTKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCANDLAGVPGVLSVQPDDNFESENKDYEGRNLENSLNKTKSSEASKEVSVETKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKPTPPRYNTGRARPSA* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1080 282 SMART rrm1_1 191 264 IPR000504 GO:0003723
Tpr1g1080 282 Gene3D - 159 282 IPR012677 -
Tpr1g1080 282 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 55 281 - -
Tpr1g1080 282 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 55 281 IPR039206 GO:0016554
Tpr1g1080 282 SUPERFAMILY RNA-binding domain, RBD 182 279 IPR035979 GO:0003676
Tpr1g1080 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 258 IPR000504 GO:0003723
Tpr1g1080 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Tpr1g1080 282 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 73 158 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1080 Tpr-Chr1 9721742 9726084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1080 182 272 C2H2 Transcription Factor Family AT2G19380 31.868 5.12e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1080 - - mtr:MTR_1g092860 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1080 1 9721742 9726084 Tpr1g1080 1 9721742 9726084 ECH