Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1073 ATGCAAACTCATCATCATCAGTACTACTCATTATCTTGTGTGAGTACTAGTGAGAGTATCTCCTGCAGCAGTTTAGAAGATGAAGATTCCATTTTCCTTTCTCTTGCCCCTCCTGGCCACCAACAAATACCACCAGCTCCTCCCAAACTCTCATCATCCACCACTACTATCCCTCCTCCCCTTCAACAAAATACTATCTCTCCTCTTCATGATCATACTTTTGCTGTAAATGTAGCACTTTCTTCCCCTCTCCTCCACATTTCCCTTAATCCAACTTCCACTTCCGAACCACCTCACAATCCCATTCCTCAATACTGGATCCCTTCTCCTTCCCAAATCCTTATTGGTCCCACCCAATTCTCCTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCTGAATCTCTAAAAGGCTCAAAACCAACATCATCATCTTCATCAATGTTGAAACTACCCTGCTATTGTTGTGCTGAGGGATGCAAAAACAACATAAACTATCCAAGATCAAGACCATTGAAAGATTTCAGGACACTTCAAACACACTTCAAGAGGAAACATGGAGGGAAAACATTCGAGTGCAGGAAGTGTAGGAAACCATTTGCTGTGAGAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAGCTTTGGTTCTGTATCTGTGGTTCTGATTTCAAACATAAAAGATCACTTAAAGATCATGTTCGTGCTTTCGGTAATGGCCACGCTCCACATACATTGGAATCTTTGAGCTTTGATCATGAATATAAAGCAAATGAAAATTTCAAAGAAGAAGAAGCAAGTGGAAGTGAAGATCAAGATGAAGAAGATAATAACAGGCTGTTCAATGTTGCTTTATTATGTGATTTAAAGGGAAAAGAGAGAGTAACGTAA 945 0.4063 MQTHHHQYYSLSCVSTSESISCSSLEDEDSIFLSLAPPGHQQIPPAPPKLSSSTTTIPPPLQQNTISPLHDHTFAVNVALSSPLLHISLNPTSTSEPPHNPIPQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLKGSKPTSSSSSMLKLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHFKRKHGGKTFECRKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHTLESLSFDHEYKANENFKEEEASGSEDQDEEDNNRLFNVALLCDLKGKERVT* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1073 314 PANTHER ZINC FINGER PROTEIN WIP2 9 296 IPR043584 GO:0003700|GO:0010468
Tpr1g1073 314 SMART c2h2final6 171 203 IPR013087 -
Tpr1g1073 314 SMART c2h2final6 208 228 IPR013087 -
Tpr1g1073 314 SMART c2h2final6 120 142 IPR013087 -
Tpr1g1073 314 SUPERFAMILY beta-beta-alpha zinc fingers 103 141 IPR036236 -
Tpr1g1073 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Tpr1g1073 314 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Tpr1g1073 314 Gene3D Classic Zinc Finger 119 142 - -
Tpr1g1073 314 PANTHER ZINC FINGER PROTEIN WIP6 9 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1073 Tpr-Chr1 9652372 9654387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1073 27 264 C2H2 Transcription Factor Family AT1G13290 65.476 2.29e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1073 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1073 - - mtr:MTR_1g093095 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1073 1 9652372 9654387 Tpr1g1073 1 9652372 9654387 ECH