Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1066 ATGCTGGTTCGAAGAAGAGTGATGAGTTGGAGAAGGGTAGCCAAATCCCTTCAAGCTATGTTAGCTCATGCCTTTCTTTTCTCCTTCACTCTTCTCCTTGTTCTCAAACTTGACCGTTTCTTCATTTTTTCATGGTGGACCGTGTTTTTGCCTCTTTGGTTGTTTCATGTGGTTGTAGCACGAGGCAGGTTTTCCATGCCTGCTCCTTCAATGCCTCATGGTCGCCAATGGGCACCTTGTCATTCAGTTATAGCAACACCATTACTTGTGGCATTTGAGCTTCTTCTGTGTATACATCTTGGTAGCAGTTATGTGGTGAATTTGAAGATTGTATTCATACCTCTTATAGCTTTCGAATTGGTGATTTTGATCGATAACATTAGGATGTGTAGGGCTTTGATGCCTGGAGATGAGGAAAATATATCGCATAATTCTGTTTTCCAGCATTTCTGGATTTCGATATCCATGGTCTTCTTTATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCCGCTCTTGGATGGTGGGACTTGTTTATAAACTATGGTATCGCACAGTGCTTTGCGTTTCTCGTATGTACAAAGTGGCACAATCCTACAATTCATGGAAACGGTCACATTACAGAACCATGTTCATCGTCAAATACCATAAGATATTTGGAATGGAGTAGAGAAGGTATAGTTATTTCTACCGATGAAGATGGGGAGCAAAATGCGTTTTGCAGTCTGCAGGACATAGGCGGACATATAATGAAAATTCCATTCATTGCTTTCCAAATGCTACTTTTTATGCATTTAGAGGGAACACCATCGGGTGCAAAAGATATACCCATTTGGGTAATTTTTTCTCCGCTTTTACTGTTGCAAGGAGCTGGAGTATTATTTGCAGCATATAGATTAATAGAGAAGATTGTTCTTTTACTCCATCATGGGGATCTTCCTAGGAGCTACTCATCTATAGCATCAAAATCCCGTGACTGCTTTGGGTTTTTTCATCATGGATCAAGGTTGTTAGGTTGGTGGTCAATAGATGAAGGAAGTAGAGAGGAAGAAGCTAGACTTTTCTGTGCCGGGAGTTCTGGGTATAATACTTTCTCTCCCGATACCGTGAAGAAAATGCCTAGAGGGGAACTTATTGAGGAGATTTGGAGACTTCAAGCTGCACTTGGTGAGCAGACAGAAGTTACAAAATATAGCCAGGAGGAATATGAAAAACTTCAAAATGAGAAGATCTTATGTAGAGTTTGCTTTGAAGAACAGATTAATGTCGTCCTACTTCCCTGCAAGCATCACATTCTAATCAATGACACAAGAAGGCTTCTAATCAATGACACACCCATATTTCAAATGACATTTTGA 1371 0.4048 MLVRRRVMSWRRVAKSLQAMLAHAFLFSFTLLLVLKLDRFFIFSWWTVFLPLWLFHVVVARGRFSMPAPSMPHGRQWAPCHSVIATPLLVAFELLLCIHLGSSYVVNLKIVFIPLIAFELVILIDNIRMCRALMPGDEENISHNSVFQHFWISISMVFFIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGNGHITEPCSSSNTIRYLEWSREGIVISTDEDGEQNAFCSLQDIGGHIMKIPFIAFQMLLFMHLEGTPSGAKDIPIWVIFSPLLLLQGAGVLFAAYRLIEKIVLLLHHGDLPRSYSSIASKSRDCFGFFHHGSRLLGWWSIDEGSREEEARLFCAGSSGYNTFSPDTVKKMPRGELIEEIWRLQAALGEQTEVTKYSQEEYEKLQNEKILCRVCFEEQINVVLLPCKHHILINDTRRLLINDTPIFQMTF* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1066 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 441 IPR013083 -
Tpr1g1066 456 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 440 - -
Tpr1g1066 456 Pfam Transmembrane Fragile-X-F protein 35 292 IPR019396 -
Tpr1g1066 456 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1066 Tpr-Chr1 9547365 9554426 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1066 8 440 C3H Transcription Factor Family AT1G73950 61.712 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1066 - - gmx:113000756 739.569