Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1052 ATGGCGGCTGCTTCATCATCTACATCATTATTTGGAATTAGAGAAGAAAATCAAAGTCAGATAACAACTTCTTCAGATCCTTCATCCACAATTCCTCCAAAGAAAAGAAGAAATCAACCAGGAACACCAAAGCCAGATGCAGAAGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAATAGATTTATATGTGAGGTTTGCAATAAAGGGTTTCAAAGGGAACAAAATCTTCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGTTAAAGCAAAAGTCTAACAAAGATCCAAAGAGAAAGGTTTATTTATGTCCTGAACCCACATGTGTTCATCATGATCCTTCAAGAGCTTTAGGAGACCTAACTGGGATTAAGAAGCATTACTCTCGTAAGCATGGTGAGAAGAAATGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATTACTCATAGAGCATTTTGTGATGCACTAGCACAAGAGAATGCATTAAGACACCCTAACCCTTTTGGGAGTACTCATCATTTGTATTCCACAACAAACACAAGCCATCACATGAATTTAGGCCAAATTTCTCATCAATTACAAAATCATCAAAACCAAACTAACAACAACATTTTGCGCCTCGGATCATCATCATCGGCGCCAAAATTTGAACAACAATTAATCACATCACAACAACCTTTGAATCATCACTCTTCATTTGCTACATTCTTCATGAGTGATATTCCAAATCAATCATCATCATTTGAAGAACACCAATTTACAAACAAACAACTTCATGGTTTAATGCAACTTCCTAATCTTCAAGGAAACAATACAAACAATAATGTTTTCAACCTCATGAATAATATTCAAGATCATCAACAATTCAACAACCCTCTAATTAATGATCATCATCATCAATCAATGTTTGATCAAAACATGTCTAGTGATCCTCACATGTCAGCTACTACATTGCTTCAAAAAGCTTCACAAATTGGTTCAACAAATTCAACAAACAACAACAAAGGTAACACTAACATTAACACCGCTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATGATGATGACAACAATGATGAACTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCATCCATATTTGGTGGATCAGATAAGTTAACTTTAGATTTTCTTGGTGTTGGTGCAATGGTTAGAAACATGAATAGTGGTGCTGGATTTTCACAACATGCTATGAATACTACTAGTATGGCTTCTTTGAATCATGACCTAAAATCAGTTCAGTCAAGTCAAAGTCAACACTTTGGAAGCTCAAATTTCATGCAATGA 1425 0.3544 MAAASSSTSLFGIREENQSQITTSSDPSSTIPPKKRRNQPGTPKPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKDPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQENALRHPNPFGSTHHLYSTTNTSHHMNLGQISHQLQNHQNQTNNNILRLGSSSSAPKFEQQLITSQQPLNHHSSFATFFMSDIPNQSSSFEEHQFTNKQLHGLMQLPNLQGNNTNNNVFNLMNNIQDHQQFNNPLINDHHHQSMFDQNMSSDPHMSATTLLQKASQIGSTNSTNNNKGNTNINTAFGNRSSSMENDDDDNNDELHGLINSIANGNTSSSIFGGSDKLTLDFLGVGAMVRNMNSGAGFSQHAMNTTSMASLNHDLKSVQSSQSQHFGSSNFMQ* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1052 474 Gene3D Classic Zinc Finger 117 195 - -
Tpr1g1052 474 Gene3D Classic Zinc Finger 43 111 - -
Tpr1g1052 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 407 - -
Tpr1g1052 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 409 441 - -
Tpr1g1052 474 MobiDBLite consensus disorder prediction 1 46 - -
Tpr1g1052 474 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tpr1g1052 474 MobiDBLite consensus disorder prediction 1 36 - -
Tpr1g1052 474 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Tpr1g1052 474 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Tpr1g1052 474 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 407 - -
Tpr1g1052 474 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 409 441 - -
Tpr1g1052 474 SMART c2h2final6 63 85 IPR013087 -
Tpr1g1052 474 SMART c2h2final6 139 159 IPR013087 -
Tpr1g1052 474 SMART c2h2final6 104 134 IPR013087 -
Tpr1g1052 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1052 Tpr-Chr1 9288531 9293602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1052 58 434 C2H2 Transcription Factor Family AT2G02080 50.000 1.95e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1052 zf-C2H2_jaz 2.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1052 K25870 - gmx:100806198 484.567