Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1036 ATGGCTGGGAAGGTGGCGAAGGCAGCTTACGATGCAAAGATGGGGAAGCTTCTTCGAGAGTACACACAAGTGTTGGTGGTTTCATCAGACAATGTTGGATCAAACCAACTTCAGGGTATAAGAAGGGCACTGCATGAAGATTCAGTGGTAGTGATGGGGAAGAACTCGTTGATGAAACGCTCTATCATTCAAGAAGCGGAGAAAACCGGAAACAACAACGCTTTCCTTAATCTTGTTCCACTCCTTGTGGGTAACGTTGCATTGATTTTTACCAAAGGTGACTTGAGGGAAGTTAGTGAACGGATTGCCAAGCTCAAGGTTGTTAATCCTATTCTCATGTGCCCTAAGTACAGATCATATGACTCATATAAAACTTGTTCCTATATGCAATCCGGACAGTTGCCATTGGGCCTCACATGTTGTCACCAACAATCTTCAGAAGCTTCTGAGCCTTTTCTTGTAAGCTCAAAATTCTCGCCACCCCAGCACTGTTACTTGATGCGATCGAGACAGTTCTTGATGACAAGCATATGGTCTCCTTTTCTCCTTTTGGCCGGTAACTTGTGA 567 0.4444 MAGKVAKAAYDAKMGKLLREYTQVLVVSSDNVGSNQLQGIRRALHEDSVVVMGKNSLMKRSIIQEAEKTGNNNAFLNLVPLLVGNVALIFTKGDLREVSERIAKLKVVNPILMCPKYRSYDSYKTCSYMQSGQLPLGLTCCHQQSSEASEPFLVSSKFSPPQHCYLMRSRQFLMTSIWSPFLLLAGNL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1036 188 PANTHER RIBOSOMAL PROTEIN L10P-RELATED 1 187 - -
Tpr1g1036 188 SUPERFAMILY Ribosomal protein L10-like 7 107 IPR043141 -
Tpr1g1036 188 Gene3D - 3 122 IPR043141 -
Tpr1g1036 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Tpr1g1036 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1036 Tpr-Chr1 9144146 9146360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1036 1 110 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 62.281 3.51e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1036 K02941 - jre:108980032 144.436