Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1027 ATGTGTAGTAGTTGGAGATTGTTTCTATGGTTGTTTTTCACATTGAGCTTATTCTTTGGTAGTAAGAAGATGCATTGTCAAGATATGAATGACTATGACCAAATTGATAACCCTGCTGTTCTTCCTCTTATTACTCAGCTTGTTTATACCAGAATTTCCAATTTGACTTCAATTCTCAGTCATCAAATTAGTACTGAATCCAATTTCTGTGTCAAAGATCAGGATTCTGATTGGAATCAAGCCTTTAATTTTTCATCAGATTTGGGCTTCTTGGAATCTTGCATTAAAAAGACAAAAGGAGATATTACAAACCGCTTGTGTACAGCCGCAGAAGTGAAGTTTTACTTAAATAGTTTAATGGAGAAATCTACAAGTGCCAATTATTTAAAGCCTAATAAGAACTGCAATTTAACCTCATGGGTTTCTGGTTGTGAGCCCGGATGGGCATGTAGTGTTCCCCCCTCAAGCCAGAAGATTGACCTTGGAGATTCAAAGGAGATGCCTTCTAGAACTTCAAACTGTCAAGCATGTTGTGAAGGCTTCTTTTGTCCTCACGGTATCACGTGCATGATACCATGCCCTCTAGGTTCCTATTGCCCCCTTGCTACGCTCAATAAAACAACTGGTGTATGTGAACCATATCTTTATCAACTACCTCCAATGAAGCCAAACCATAGCTGCGGAGGAGCAAATACATGGGCTGATTTCAGTAGCAGTAGTGAAACATTTTGCTCAGCAGGATCCTATTGTCCAACAACCACCCAAAAATTTCCTTGCAGTAGTGGGCATTACTGCAGGACGGGTTCCACATCTGAGAAAAGATGTTTCAAACTGAGTTCATGTAATTCAAACACGGCAACCCAAAACATGCATGCATATGGAATTATGCTCATTGCAGCTTTGAGTACTTTGCTACTCATTATTTACAACTGTTCTGACCAAGTTCTCACTACTAGGGAAAGGAGAGTGGCAAAATCAAGAGAAGCAGCGGCTAGAAGTGCAAAGAAAACTGCAAATGCACACCAAAGATGGAAATTTGCAAAAGATGCTGCTAAGAAGGGTGCAACTGGGCTGCAAGCTCAGTTATCACGTAAATTCTCTCGTAAAAAGGACGAAGAAAATATTGAAAAAGTTAAAATTTTGAATCAAGAGACTTGTGAAACAGATGTTGAATTGTTGCCGCATTCACAACCTTCAAGCATGGTTGGAAGTTCTGCAGCGCCAACTGAAAAGGGAAAAAATCCAAGTGGACTAATGCATATAATACATGAAATTGAAAATGATCCGCATGTTATCGACAATCCCAATATAGAAAGAGGAACTAGACATAAAAGTGCTACGAAGGAAAAACAGCCACAAACTAATACACAAATTTTTAAGTATGCATATGCTCAACTTGAAAAAGAGAAGGCTCAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTATTAAAAATGGCCACAAATACTGAGAAAATGAAAAGGCCTTTTATTGAGATTTCTTTCAAAGATCTGACTCTCACACTTAAATCTCGAAATAAACATATATTGAGAAATGTTACGGGGAAAATCAAACCTGGCCGTATCACTGCTGTCATGGGTCCGTCAGGGGCTGGTAAGACAACTTTTCTCTCAGCTCTAGCTGGAAAGGCATTTGGATGCCTGGTTAATGGTTCAATTCTTATAAATGGAAGGCATGAATCAATTCATTCCTTTAAGAAAATTATCGGCTTTGTGCCACAAGATGATGTAGTCCATGGAAACTTGACAGTGGAAGAGAATCTCTGGTTCAGTGCACAGTGCAGGTTATCAGCTGATTTGTCAAAACCAGAAAAAGTTCTGGTTGTTGAAAGAGTTATTGAATTCTTGGGGCTTCAATCTGTGCGGAATTCGGTAGTTGGAACAGTGGAAAAGCGAGGTATCTCTGGAGGCCAAAGGAAGCGAGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTTTGATGCTAGATGAACCGACGTCTGGCCTGGACAGTGCATCATCTCAGCTCCTTCTAAGAGCATTAAGACGCGAAGCTCTTGAGGGAGTGAACATTTGCATGGTGGTTCACCAACCTAGCTATGCTTTGTTCAACATGTTTGATGACTTGATACTTCTGGGTAAAGGTGGTCTCATGGTCTATCACGGATCTTCCAAGAAAGTTGAAGAATACTTTTCAGGTTTGGGGATCAATGTTCCGGAGCGGATCAACCCTCCAGATTACTATATTGACATTTTGGAGGGCATAGCAGCACCTGATGGAAACTCGGGACTCCGTTATGAAGATCTCCCAGTTAAATGGATGCTTTATAATGGATATCCAATACCTCATGATATGAGGCAGCATGCAGCACAGTTCGATATGCCACAAAGTGTAAATCCAGCTAATGAATCGAGTGAAGTGGGAAAGACGTTTGCTGGAGAGTTATGGAATGACGTGAGAAATAACGTGGAACTGCGAGGGGAAAAGATAAGAGTTAATTTTTTAAAATCCAAGGATTTATCCGGCCGGAAAACTCCCGGTGTATTTAAGCAATATAAGTACTTTCTTATACGTGTTGGAAAGCAAAGATTACGAGAAGCTAGAATCCAGGCTGTAGATTATCTTATTTTGTTACTTGCTGGAGCTTGTTTAGGATCAATTACCAAATCGAGTGATCAAACGTTTGGCGCATCTGGTTACACCTATACGGTGATTGCTGTATCTCTTCTATGCAAAATAGCCGCGTTGAGATCATTTTCTTTGGATAAATTGCACTACTGGAGGGAGAGTGATTCCGGCATGAGTAGCTTGGCTTATTTTCTCTCCAAAGACACAATGGATCATTTTAATACAGTGATCAAGCCTGTGGTGTACCTATCTATGTTCTATTTCTTTACCAATCCAAGGTCTACTTTTGCCGATAATTATATTGTGTTGCTTTGTCTTGTATACTGTGTGACCGGCATAGCATACGCACTGTCCATAGTTTTTGAACCTGGCGCGGCTCAGCTGTGGTCAGTACTTCTTCCTGTTGTTTTGACTCTCATTGCAACACAACCAAAAGATAGTAAAATTTTAAAGGCTATAGCTAATTTGTGCTACTCAAAATGGGCTTTACAAGCGTTGATCATTGCAAATGCTGAAAGGTATCAAGGAGTGTGGCTCATAACTCGATGCGGTTCACTTTTAAAAAGTGGCTATAATCTTCATGATTGGAGTCTCTGCATATCCATTCTCATTCTTATGGGTGTAATTGGTCGCGCAATAGCATTTTTCTGTATGGTTACCTTAAAAAAGAAGTAA 3312 0.4001 MCSSWRLFLWLFFTLSLFFGSKKMHCQDMNDYDQIDNPAVLPLITQLVYTRISNLTSILSHQISTESNFCVKDQDSDWNQAFNFSSDLGFLESCIKKTKGDITNRLCTAAEVKFYLNSLMEKSTSANYLKPNKNCNLTSWVSGCEPGWACSVPPSSQKIDLGDSKEMPSRTSNCQACCEGFFCPHGITCMIPCPLGSYCPLATLNKTTGVCEPYLYQLPPMKPNHSCGGANTWADFSSSSETFCSAGSYCPTTTQKFPCSSGHYCRTGSTSEKRCFKLSSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQVLTTRERRVAKSREAAARSAKKTANAHQRWKFAKDAAKKGATGLQAQLSRKFSRKKDEENIEKVKILNQETCETDVELLPHSQPSSMVGSSAAPTEKGKNPSGLMHIIHEIENDPHVIDNPNIERGTRHKSATKEKQPQTNTQIFKYAYAQLEKEKAQQQENKNLTFSGVLKMATNTEKMKRPFIEISFKDLTLTLKSRNKHILRNVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCLVNGSILINGRHESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVVERVIEFLGLQSVRNSVVGTVEKRGISGGQRKRVNVGLEMVMEPSLLMLDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFNMFDDLILLGKGGLMVYHGSSKKVEEYFSGLGINVPERINPPDYYIDILEGIAAPDGNSGLRYEDLPVKWMLYNGYPIPHDMRQHAAQFDMPQSVNPANESSEVGKTFAGELWNDVRNNVELRGEKIRVNFLKSKDLSGRKTPGVFKQYKYFLIRVGKQRLREARIQAVDYLILLLAGACLGSITKSSDQTFGASGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTMDHFNTVIKPVVYLSMFYFFTNPRSTFADNYIVLLCLVYCVTGIAYALSIVFEPGAAQLWSVLLPVVLTLIATQPKDSKILKAIANLCYSKWALQALIIANAERYQGVWLITRCGSLLKSGYNLHDWSLCISILILMGVIGRAIAFFCMVTLKKK* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1027 1103 ProSitePatterns ABC transporters family signature. 642 656 IPR017871 GO:0005524
Tpr1g1027 1103 PANTHER ABC TRANSPORTER G FAMILY MEMBER 24 34 1100 - -
Tpr1g1027 1103 SMART AAA_5 527 719 IPR003593 -
Tpr1g1027 1103 Gene3D - 499 736 IPR027417 -
Tpr1g1027 1103 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 34 1100 - -
Tpr1g1027 1103 CDD ABCG_EPDR 499 725 - -
Tpr1g1027 1103 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 723 IPR027417 -
Tpr1g1027 1103 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 501 742 IPR003439 GO:0005524
Tpr1g1027 1103 Pfam ABC-2 type transporter 699 1103 IPR043926 GO:0140359
Tpr1g1027 1103 Pfam ABC transporter 518 670 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1027 Tpr-Chr1 9024072 9031111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1027 501 720 Calmodulin-binding Proteins AT2G36910 26.556 2.60e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1027 - - lang:109341040 1848.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1027 1 9024072 9031111 Tpr1g3940 1 43748831 43760353 ECH
Tpr1g3940 1 43748831 43760353 Tpr1g1027 1 9024072 9031111 ECH
Tpr1g1027 1 9024072 9031111 Tpr1g1027 1 9024072 9031111 ECH