Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1023 ATGGGTAATGTTGAAATCCCTAATTGGCTTGAGGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACTGAATTTTCTGACCCAATTGCTTATATTTCAAAGATTGAGAAAGAAGCTAGTAATTTTGGGATATGCAAGATTATTCCACCTTTGCCCAAACCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGCGTCCTGAATTGGGTCTAGATAATAGTTCTTTAGGTGTTGGTAATTCTTGGAAAATGGGTGCCGATGGTAGTAACGGTGGGGTATCGCGGGCCGTGTTTACCACAAGGCAACAAGAAGTGGGGCAGAATGTTAAAAAAACCAAAGGGGGAGTTCAGAAGCCACTGTCATGTGTTCATAAGCAAGTGTGGCAAAGTGGAGAGGTTTATACATTGGAACAGTTTGAGGCAAAATCGAAGTCTTTTGCTAGAAGCATTCTAGGTACGTCGAAGGACGTTTCTCCACTGGTTGTAGAGGCTATGTTTTGGAAGGCAGCTTCGGAGAAGCCTATATATGTGGAGTATGCCAATGACGTGCCTGGCTCTGCTTTTGGGGAATCACAGGGTCAATTTTATCATAGTCATAGAAGGCAACGAAAAAGGACTTATTATAAGAGTAGAGTAGATAGCTCCGTTTGTAAAGAAACTGAAATGGGTGGTGTAAAAGATACACAAAATGATGAGTCTAATGGCGTTACTGCCCCAAGTAATGGGGAGTCATGTTTAGAGATGTCTAAATCAGCTACAACTATGTCAACGTCTACACCAATTGAGGTGTCGCAGTCTTCTAAGGAGAAGAGTTCAGATGCCGACAATGATTTGCAAGGCACTGCTGGTTGGAAACTTTCAAATAGTCCTTGGAATTTGCAAGTTGTTGCTCGCGCTTCAGGCTCACTAACACGTTTCATGCCAGACGATATTCCCGGTGTTACTTCACCTATGATATACATTGGCATGTTGTTCAGTTGGTTTGCCTGGCATGTAGAGGATCATGAGCTTCACAGCTTGAATTTTCATCACACTGGCTCATCTAAGACTTGGTATTCTGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACAGAGGGTTATGGTGGTGATATTGATCAATTAGCTGCTTTGAAACTTTTGGGCGAGAAAACAACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAGTACAGAACCCTGGTGAATTTGTGGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGCGGGGAAGCTGCTAACTTGGCAACTCCACGATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTTTCCCATCAGCAACTACTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTGTTACCCGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGATTCTAGTTAAACGGGCTTTTATAGAAGATATGCTGCAGGAAAACAAGCTGCTATCCATTCTTCTCGGAAAAGAAGCTACTAAACAGGTTGTTTTATGGAATGCTGATTTACTACCAGATTCTGGCAAATATCGCCGATTGCCTGATTTAGCTTCTACTTCTGGGACCTATATGGCCGACATGTCAAATGATAATATTAGTTCTGCAGATAAGAGTAGCCATTCTCTGCTTGATGAGATGAGTTTGTACATGGAGAATCTGTCCGATTTATATGTTGGTTGTGATGAACTTCCATGTCACTTCCAAACCGATTCAGGAGCATTAGCTTGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACACTGATACAGCCAACTGAAAAATCGATAATGGAACTTCTTCCTGATAATCATCATCTAGTTAAAGATTCCTCTCTGATCTCTGTAGCCTCCCTTCACAGTGCAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGTGCTGGCAAAGGATTCGCAGAATCAGTCATTGAACAAGTGCAATAAATATTGGAACACCTCCAGTAAATTTTTGAAGCCGCGAATTTTCTGCTTGGAGCATGCTGTTCAGATAGTAGAGATGTTGCAAAGCAAAGGTGGAGCCAATGTGCTTATAATTTGTCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGATATACAAAGTGCTTTTGATCATAATGAGGTTCCAATGGATATTGCATCCCCAGAAAATTTGGCTCTGATAGATCTGGCAATTGATGGTGAAGAAGAACTTAATGAATTTGAAGATTGGACATCTAAACTAGGCCTTAACCTGCGATTTTGTGTCAATAATATAAACAAATCTTCATGTAAACAATTTCCTCTGACACTAGCATTAGGGATGCAGTTCTATGATAAACGTCCCGGTTTATCTTTAAATTGGCATTCAAGGAAAACTCGGTCTAAAAGGTCAAACCGTTTAGCTCAGGCTAAACCTGACAGCATTCAGAGAAAGACGGATGATCCATTGCATGGAAGAATAGATGGCTCCACTGCTAAAAAGAAGCTAATTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGTTGTTTCTCTGAAGCAAGCACAATCCGTGAATCCCATGAAAAGTTAAAAAATGCGTCAGCTGTTTTGAGTGGCGATCATGACACATGTGTTTCTAAAGATGAGCTTGACACAGACAATTTCAGGAGTAATTGTGCATTGTCACATGGCTCTGCTTCTGCTGCAATGTCTCCAACGCATCCTGAAATCCAGAATGCTGAAGCTCCCATCTGTCCAAGCTTAAATACCAGTGTCTCAGAAATATGTGGCAAAGAGAGCCAAGATTGTCAGGACAGAGGATATTCTGGCTCACTTACATATGGAATAGACGGAAATGTTGATGTGTTTGGAAGCAACCAAATTACAGAAGCAATTGTCATTGATAGCAAGTGTAATAGCTTAGATTTGGATGGTGAAGGGTATCATGAACATCAGTCTGCGTGCAAAAGCAACAGCAACGGTGAAGCTGTTTTATCTACTTCATTGGTAAACCAGCCTGCTCTCGCCACTGCAGATGGAAGTTTTGAAAGTCCAAAGAATAATGACGCTGAAGAGAAAGTTAGCCATTCTATGTCATTAAAAGAGACAACTGAGGGAGAAAGTAAGCCTTCGAATGAAATGGACAGGGTACCTCTAAATGATGATAAAGCAATAAGTGAACACACTCCTATTGCAGATGTTTGTGAAATTCCAGGAAAGCTTTATGATGCTGCAGACTTCCATAATACAGTATGCTTGGATGCTACGATGCAGCAAGAACTGCAGGTTGGAAAAGGTGGTGATAAGGAAATAATTCAGTCCACTCATATTTCAGAAAAAGAATTGTGTGAATCTACAAGTGGGGAATATGCCAAGGAGTTGCACGATGAAGTGATTTTAGAGTCTGCAAAGCAGATTCAGATCCAAAATGAGAATAGAACTAATGAGGAGCCTGTTTCTAGTGATATTACAAAAGGTGTAAGTGTAACAATACCAGAAATAGGATGTTCTGAAGTTTTGGCAGAAACCTGCCCTAAAGAAGACTCCTGTATTCAATTTATTTCGAATGCAGAAAAGGAAATGGAAATCCAACCAATTTGTAGAAGTGATGAGGAACTTTCTGTATCAATCCAGGAATGTTCTAAAACCGAGAAAAAGACACGTGGTAGAGAAAACGAATATGGAAGCGAAGTTGATCTGTCACAAGATAATGGAGAGCTGGAAAGCTATGACTTGACTACTACGGTTCCCAGATCAAATGCTGAAAAGAAAAAAAAGAGGAAAATGGAACACATGGCAATGGACCAATTTGAGTTCAATGACTTTATAAGAAGTCCATGTGAGAGACTGAGGCCAAGAACTGGGAAGATTGCCTGTGCCACCACAGGCAAAACTGGAGGGGACATCAGCCAACAAAAAGAGGAAAATCCGGTAGCTAAAAGGACACGGAAGCCTCCTGAAGCTTCAGTTCCTCACAAGGATAAAAAAGCTTCAGTTCCTCACAAGGATAAAAAAGTCGATGTCAAAAAGCCGCACAAGTGTGACATTGATAATTGCCATATGAGTTTCCCGACTAAGGCTGAACTACAGTTGCATAAACGTAACATGTGCCCAGAAAAAGGGTGTGGTAAGAGGAAGTTCCGTTCCCACAAATACACACTGATTCACCAGCGCGTTCATGAGGATGATAGGCCCTTTGAATGTCCATGGAAAGGCTGTTCCAAGTGTTTCAAGTGGGCATGGGCAATGACAGAGCATATAAGGGTGCATACTGGGGAGAAGCCTTATCAATGCAAGGTGGAGGGATGCGACCTTTCTTTCAGATTTATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTATGTGTAA 4473 0.4134 MGNVEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEKEASNFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGLDNSSLGVGNSWKMGADGSNGGVSRAVFTTRQQEVGQNVKKTKGGVQKPLSCVHKQVWQSGEVYTLEQFEAKSKSFARSILGTSKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYHSHRRQRKRTYYKSRVDSSVCKETEMGGVKDTQNDESNGVTAPSNGESCLEMSKSATTMSTSTPIEVSQSSKEKSSDADNDLQGTAGWKLSNSPWNLQVVARASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFHHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDIDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANLATPRWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKRAFIEDMLQENKLLSILLGKEATKQVVLWNADLLPDSGKYRRLPDLASTSGTYMADMSNDNISSADKSSHSLLDEMSLYMENLSDLYVGCDELPCHFQTDSGALACVGCGILGFPFMTLIQPTEKSIMELLPDNHHLVKDSSLISVASLHSAVSRDLSVSELVLAKDSQNQSLNKCNKYWNTSSKFLKPRIFCLEHAVQIVEMLQSKGGANVLIICHSDYPKIKAHARAVAEDIQSAFDHNEVPMDIASPENLALIDLAIDGEEELNEFEDWTSKLGLNLRFCVNNINKSSCKQFPLTLALGMQFYDKRPGLSLNWHSRKTRSKRSNRLAQAKPDSIQRKTDDPLHGRIDGSTAKKKLIQYSRRKFKSKQSCFSEASTIRESHEKLKNASAVLSGDHDTCVSKDELDTDNFRSNCALSHGSASAAMSPTHPEIQNAEAPICPSLNTSVSEICGKESQDCQDRGYSGSLTYGIDGNVDVFGSNQITEAIVIDSKCNSLDLDGEGYHEHQSACKSNSNGEAVLSTSLVNQPALATADGSFESPKNNDAEEKVSHSMSLKETTEGESKPSNEMDRVPLNDDKAISEHTPIADVCEIPGKLYDAADFHNTVCLDATMQQELQVGKGGDKEIIQSTHISEKELCESTSGEYAKELHDEVILESAKQIQIQNENRTNEEPVSSDITKGVSVTIPEIGCSEVLAETCPKEDSCIQFISNAEKEMEIQPICRSDEELSVSIQECSKTEKKTRGRENEYGSEVDLSQDNGELESYDLTTTVPRSNAEKKKKRKMEHMAMDQFEFNDFIRSPCERLRPRTGKIACATTGKTGGDISQQKEENPVAKRTRKPPEASVPHKDKKASVPHKDKKVDVKKPHKCDIDNCHMSFPTKAELQLHKRNMCPEKGCGKRKFRSHKYTLIHQRVHEDDRPFECPWKGCSKCFKWAWAMTEHIRVHTGEKPYQCKVEGCDLSFRFISDFSRHRRKTGHYV* 1491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1023 1490 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1483 - -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 224 281 - -
Tpr1g1023 1490 SUPERFAMILY beta-beta-alpha zinc fingers 1413 1468 IPR036236 -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1247 1294 - -
Tpr1g1023 1490 ProSiteProfiles Zinc finger C2H2 type domain profile. 1378 1407 IPR013087 -
Tpr1g1023 1490 Gene3D Classic Zinc Finger 1429 1457 - -
Tpr1g1023 1490 ProSiteProfiles Zinc finger C2H2 type domain profile. 1462 1490 IPR013087 -
Tpr1g1023 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 1434 1456 IPR013087 -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1051 1081 - -
Tpr1g1023 1490 SUPERFAMILY Clavaminate synthase-like 291 455 - -
Tpr1g1023 1490 Gene3D Cupin 9 463 - -
Tpr1g1023 1490 Gene3D Classic Zinc Finger 1458 1488 - -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 232 272 - -
Tpr1g1023 1490 SMART c2h2final6 1462 1488 IPR013087 -
Tpr1g1023 1490 SMART c2h2final6 1378 1400 IPR013087 -
Tpr1g1023 1490 SMART c2h2final6 1432 1456 IPR013087 -
Tpr1g1023 1490 SMART c2h2final6 1401 1426 IPR013087 -
Tpr1g1023 1490 Pfam JmjC domain, hydroxylase 324 441 IPR003347 -
Tpr1g1023 1490 ProSiteProfiles JmjC domain profile. 290 459 IPR003347 -
Tpr1g1023 1490 Pfam jmjN domain 17 50 IPR003349 -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 826 856 - -
Tpr1g1023 1490 ProSiteProfiles Zinc finger C2H2 type domain profile. 1432 1461 IPR013087 -
Tpr1g1023 1490 SMART JmjN_1 15 55 IPR003349 -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1340 1373 - -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1043 1081 - -
Tpr1g1023 1490 SMART cupin_9 290 459 IPR003347 -
Tpr1g1023 1490 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1483 - -
Tpr1g1023 1490 ProSitePatterns Zinc finger C2H2 type domain signature. 1464 1488 IPR013087 -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1264 1283 - -
Tpr1g1023 1490 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1327 1373 - -
Tpr1g1023 1490 MobiDBLite consensus disorder prediction 1247 1263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1023 Tpr-Chr1 8997310 9006276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1023 1 875 C2H2 Transcription Factor Family AT5G04240 54.384 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g1023 JmjC 2.1e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1023 - - gmx:100799861 2003.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1023 1 8997310 9006276 Tpr1g1023 1 8997310 9006276 ECH