Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1022 ATGGAACATGTCAACAATGGTTGTAACGGTAATTCATCATTGAATCTTTGCATTACGACTAAGAATAATGACCCATTGAATTGGGGTATGGCTGCGGATTGTATGAGGGGTAGTCACCTAGATGAGGTGAAAAAAATGGTTGAGGAATACCGGAAACCGGTTGTGCCGTTAGGTGGAAAAGGTTTAACAATATCACAAGTGGCTGCAATTGCAACCCATAATAACGGTGTGACGGTTAAACTTGACGAAGAAACACGCGCCGCTGTTAAAGCTTGTAGTGATTGGGTTGTTGAAAGTTTGAATAATGGGACTGATAGTTATGGAGTTACCACTGGATTTGGTGCAACCTCACATAGGAGAACAAAACAAGGTGGTGCTCTCCAAAATGAACTCATAAGATTTCTGAATGCTGGAATTTTCGGCAATGGAACAGAATCGAGTCAAACCCTACCTCACACGGCCACAAGAGCAGCTATGTTGGTTAGAATCAACACATTGCTTCAAGGATATTCAGGAATCAGATTTGAAGTAATGGAAGCAATAGCAAAATTTCTGAACCATAACATAACACCATGTCTTCCATTACGAGGTACAATCACTGCATCAGGTGACTTAGTTCCTTTGTCATATGTTGCTGGCCTTTTAATTGGAAGACCAAACTCAAAATCTATTGGACCTGATGGACAAGTTCTCAATGCTAAAGAGGCTTTTCAACTAGCTGGAATTGAAAGTGGCTTTTTTGAGTTGCAAGCTAAAGAAGGTTTAGCACTAGTGAATGGTACTGCTGTTGGATCAGGTTTGGCTTCATTGGTTCTTTTTGAGACAAATTTACTTGTGGTTCTATCAGAACTTATATCCGCGATTTTCGCGGAAGTTATGCAAGGAAAACAGGAATTCACTGATCATTTGACTCATAAGTTGAAACACCATCCTGGTCAAATTGAGGCCGCGGCTATTATGGAACATATTTTAGATGGAAGTTATTATGTTAAGGCTGCACAAAAATTACATGAGACTAATCCACTTCAGAAACCTAAACAAGATAGGTACGCGCTTCGAACATCACCGCAGTGGCTTGGACCGCAGATTGAAGTGATTCGACACGCAACAAAGATGATTGAGAGGGAGATAAATTCTGTGAATGACAATCCACTTATTGATGTTTCAAGGAATAAGGCACTTCATGGAGGAAATTTCCAAGGTACACCGATAGGTGTTTCAATGGACAACACACGTTTAGCCATCGCTTCGATTGGAAAACTCTTGTTTGCTCAATTCTCTGAGCTTGTGAATGACTTCTATAACAACGGATTGCCTTCGAATCTAACCGCGGGCCGCAATCCGAGTTTGGATTACGGATTCAAAGGAGCAGAAATTGCAATGGCATCTTATTGCTCAGAACTTCAATACCTTGCTAATCCTGTCACCACTCATGTTCAAAGTGCCGAACAACATAACCAAGATGTGAACTCTTTAGGCTTGATTTCATCAAGAAAAACTGCTGAATCAGTAGAAATATTGAAACTCATGTCATCCACTTTCTTAGTTGCATTGTGCCAAGCAATTGATCTAAGGCACATTGAGGAAAACTTGAAAAGTGCTGTTAAGAACACTGTGAGTCAAGTGGCTAAGAGAGTTCTCACAATTGGTGTAAATGGTGAATTGCATCCATCAAGGTTTAGTGAGAAGCATTTGCTCAATGTTGTTGAAAGTGAGTATGTTTTTGCTTACATCGACGACCCTTGTAATGCTACATACCCTCTAATGCAGAAGCTGAGACATGTATTAGTTGATCATGCATTGCAAAATGGTGATAATGAAGCAAATTCAAGCACCTCAATTTTCCAAAAGATTGGAGCTTTTGAAGAAGAGCTCACGACCCTTTTGCCTAAAGAGGTGGAAAGTGCAAGAATTGAAGTTGAAAATGGAAACCCTGCAATTCCTAATAGGATTAAGGAATGTAGGTCTTATCCATTATACAAGTTTCTGAGAGAAACTTTAGGGACAAGTTTGCTGACAGGTGAGAAAATTATATCACCTGGTGAGGAATGTGAAAAGGTTTTCTCAGCATTGTGTGATGGAAGGTTCATTGATCCTATGTTGGAATGTCTAAAGAGTTGGAATGGTGCTCCTTTACCTATATGCTAG 2148 0.4004 MEHVNNGCNGNSSLNLCITTKNNDPLNWGMAADCMRGSHLDEVKKMVEEYRKPVVPLGGKGLTISQVAAIATHNNGVTVKLDEETRAAVKACSDWVVESLNNGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESSQTLPHTATRAAMLVRINTLLQGYSGIRFEVMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGQVLNAKEAFQLAGIESGFFELQAKEGLALVNGTAVGSGLASLVLFETNLLVVLSELISAIFAEVMQGKQEFTDHLTHKLKHHPGQIEAAAIMEHILDGSYYVKAAQKLHETNPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLLFAQFSELVNDFYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTAESVEILKLMSSTFLVALCQAIDLRHIEENLKSAVKNTVSQVAKRVLTIGVNGELHPSRFSEKHLLNVVESEYVFAYIDDPCNATYPLMQKLRHVLVDHALQNGDNEANSSTSIFQKIGAFEEELTTLLPKEVESARIEVENGNPAIPNRIKECRSYPLYKFLRETLGTSLLTGEKIISPGEECEKVFSALCDGRFIDPMLECLKSWNGAPLPIC* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1022 715 PANTHER HISTIDINE AMMONIA-LYASE 11 715 IPR001106 -
Tpr1g1022 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Tpr1g1022 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 11 715 - -
Tpr1g1022 715 CDD PAL-HAL 60 525 IPR001106 -
Tpr1g1022 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Tpr1g1022 715 Gene3D - 16 261 IPR024083 -
Tpr1g1022 715 Pfam Aromatic amino acid lyase 62 538 IPR001106 -
Tpr1g1022 715 Gene3D - 528 649 IPR023144 -
Tpr1g1022 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824
Tpr1g1022 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 24 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1022 Tpr-Chr1 8982629 8989854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1022 8 715 Monolignol Biosynthesis Gene Families AT3G53260 78.420 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1022 K10775 - gmx:100801470 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1022 1 8982629 8989854 Tpr1g3945 1 43803600 43809252 ECH
Tpr6g0906 6 7932825 7936069 Tpr1g1022 1 8982629 8989854 ECH
Tpr1g3945 1 43803600 43809252 Tpr1g1022 1 8982629 8989854 ECH
Tpr1g1022 1 8982629 8989854 Tpr1g1022 1 8982629 8989854 ECH