Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1011 ATGGTTGGACCAAACTTCATGGACGAATTAGACTGCGGCAGTTTCTTTGATCACATCGACGACCTTCTTGATTTCCCTGTCGACGATGTTGATACCGCTGCCGCTTCATTGCCGTCCGTCGCCTCTGTCGGAAATTGCAACTCGCTGGCGAGCATTTGGCCTAATGAGTCCGAGTCATTCCCTGCTTCGGACTCGGTGTTTTCAGGCGGCAGTGCTTCTGACCTCTCGGCTGAACTCTCCGTTCCGTATGAAGACATTGTTCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCATTTAGTGAGGGGAGTCTCACAATGAAGAAAGTGGAGCAGCAGCCATCATTCCCATCAATATGTGTCCCCAAGGAGGAGTCTGTGCATAACCAATTCCAGACATCAAGTCCAGTTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCCGGTGGAAAGACCACAACAGGGATTTACATCCCTGTGCCTTGTGGGCGTGCACGCACCAAGCGTCCACGTCCTGCAACTTTCAACCCTCGTTCCGCCATGCAGCTCATTTCCCCTACTTCCTCTTCCGCAGGGGAGAATGTGCAGCCAAATGTCATCTCCACCAAGGCGGCATCTTCCGATTTTGACAGTTTTGCTGAGTCTCGAATTGTGGCCAAGAAACCAAAGCTAGCTTCTGGAGAGTCCAAGAAGAAGAAGAAAATCAAGATGCCACTTCCTGCTGCTGCTGCTGCTCCAGCTGACAGCGGCGATCAGAATGGTTCGCTACCTGTTAGGAAATGCATGCATTGTGAGATCACCAAGACACCACAATGGAGGGCAGGGCCAATGGGTCCAAAAACACTCTGCAATGCTTGCGGTGTTCGCTACAAGTCGGGCCGGCTTTTCCCTGAATACCGTCCTGCTGCTAGTCCAACTTTTTGTCCAGCTTTGCACTCCAATTCCCACAAGAAGGTCCTTGAAATGAGAGTCAAGGATATTGAGAATTCCGGTTTTGAATCACATTCAGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCATTCTCGCCCTGGAGTACATTTGA 1065 0.5042 MVGPNFMDELDCGSFFDHIDDLLDFPVDDVDTAAASLPSVASVGNCNSLASIWPNESESFPASDSVFSGGSASDLSAELSVPYEDIVQLEWLSNFVEDSFSEGSLTMKKVEQQPSFPSICVPKEESVHNQFQTSSPVSVLESSSSCSGGKTTTGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSSAGENVQPNVISTKAASSDFDSFAESRIVAKKPKLASGESKKKKKIKMPLPAAAAAPADSGDQNGSLPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPALHSNSHKKVLEMRVKDIENSGFESHSAASPELIPNTNSILALEYI* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1011 354 PANTHER GATA TRANSCRIPTION FACTOR 1 354 - -
Tpr1g1011 354 PIRSF Txn_fac_GATA_plant 3 347 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tpr1g1011 354 ProSitePatterns GATA-type zinc finger domain. 260 285 IPR000679 GO:0006355|GO:0043565
Tpr1g1011 354 SMART GATA_3 254 304 IPR000679 GO:0006355|GO:0043565
Tpr1g1011 354 Gene3D - 257 304 IPR013088 GO:0006355|GO:0008270
Tpr1g1011 354 MobiDBLite consensus disorder prediction 223 251 - -
Tpr1g1011 354 ProSiteProfiles GATA-type zinc finger domain profile. 254 290 IPR000679 GO:0006355|GO:0043565
Tpr1g1011 354 PANTHER GATA TRANSCRIPTION FACTOR 8 1 354 - -
Tpr1g1011 354 Pfam GATA zinc finger 260 293 IPR000679 GO:0006355|GO:0043565
Tpr1g1011 354 CDD ZnF_GATA 259 306 IPR000679 GO:0006355|GO:0043565
Tpr1g1011 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 258 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1011 Tpr-Chr1 8867397 8872273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1011 10 328 C2C2-Gata Transcription Factor Family AT1G08010 35.604 1.94e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr1g1011 GATA 6.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1011 - - gmx:100816641 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1011 1 8867397 8872273 Tpr1g1011 1 8867397 8872273 ECH