Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1010 ATGTTTGTAGTTATGGATTCCATGGAAAAAACCACAGAAAAGTGTTTAGATTCACAACTATGGCATGCTTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTTTACTTTCCACAAGGTCATGCAGAACATGCTCATGGCAAAGTAGATTTCAACAAAACTCGTGTTCCACCACTTATTCCTTGTAGAATCTCTGCTATGAAATACATGGCTGACCCTGAAACTGATGAAGTTTATGTCAAAATGAGATTAACACCTTTAAGAGAAAATGAATTAGATTTAGAAGAAGATTGTTTCTTTGGAAACAATGGTTTAGAGGGTCAAGAAAAACCAACTTCTTTTGCTAAAACATTGACACAATCTGATGCAAATAATGGTGGTGGTTTTTCTGTTCCTAGATATTGTGCTGAGACAATTTTTCCTAGATTGGATTACTCTGCAGAACCACCTGTTCAGACAATTATTGCTAAGGATATGCATGGACAGTGTTGGAAGTTTAGACATATTTATAGAGGAACACCAAGGAGACATCTTTTGACAACTGGTTGGAGCAATTTTGTGAATCATAAGAAGCTTGTTGCAGGTGATTCAATTGTATTTTTAAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGAAGAGCTAAGAAAGGTGGAATTGGTGGTGGAATAACAGATCAGTTTTCGAATTCTTCGAGTAATTGGAACCGTGTTTCGCCTTTGTTTGGCGGTGGTGGTGGTGGTTCTGGTTTTTTGTGTGGAAATGAAAACAGAAAAAGTTGTGGTGGTGTTGGTGGTGATGATGATTTGATGAGAAGAGTTGGTTCTGAATCTGTTGTTGAAGCTGTGAATTGTGCTATTAATGGAAGATCTTTTGAAGTTGTGTATTATCCAAGAGCTAGTACTCCTGAATTTTGTGTTAAAGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTTAAAATGCCATTTGAAACTGAAGATTCTTCTAGAATTAGTTGGTTTATGGGAACTATTTCTTCTGTTCATGTTCAAGATCCAATTCATTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTACAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAGTTAGTCTCAAACATGCCAAATTTCAATCTTTCACCATTCACACCTCCAAGAAAAAAACCAAGATTTATTCAAGATCCATATTTTCATCTCATAAATCAACTTCCAATGCCAACATCATCATCATCATCATTAACATCATTCTCCAACATTAATCTTCTCAATTATACAAACTCATCTCTCTGTAACATTCAAGATAATAGTCCTAATTATAGTTCATCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGATCAAATAATAATTTTCCATCTGATTTAATTCCTTTCAACAAATTACAACAGGACATGTTTCTTGGTAATTTGTCAATGTCAAGATTTGATAAAAAACAACCTATTAGACCAACTTGTGGACCCAACAACAATAATAAGAACAATGTTGACTTGTCTTGTTTGTTGAGTGTAGGAAATTCTGGTCAAAGTTTTAAGGAATTATCCAATATTGAAGCAAAAGCACCCCATAAACACCAAATTTTGTTATTTGGAAAACTCATTCACACTGAACAACAGAACAATTCATCAAATGTTTCAAAGAGTGGTTCTTTATCTGAAGGAATTACATCATTGAAAACATCAAATGTTTCTTCTTCTTCTGATCCAGTTGAGAATTCTTCTGATGGAGGCTCACCACCTTGGTATAAGGATCAACAACAACATAAGACTGATCTTGTTGGAACAGAAAATGTTACAACATTGTGTATGGCTTCATAA 1902 0.3549 MFVVMDSMEKTTEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFNKTRVPPLIPCRISAMKYMADPETDEVYVKMRLTPLRENELDLEEDCFFGNNGLEGQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGITDQFSNSSSNWNRVSPLFGGGGGGSGFLCGNENRKSCGGVGGDDDLMRRVGSESVVEAVNCAINGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVQDPIHWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTSSSSSLTSFSNINLLNYTNSSLCNIQDNSPNYSSSSSIQGARHAQFGSNNNFPSDLIPFNKLQQDMFLGNLSMSRFDKKQPIRPTCGPNNNNKNNVDLSCLLSVGNSGQSFKELSNIEAKAPHKHQILLFGKLIHTEQQNNSSNVSKSGSLSEGITSLKTSNVSSSSDPVENSSDGGSPPWYKDQQQHKTDLVGTENVTTLCMAS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1010 633 SUPERFAMILY DNA-binding pseudobarrel domain 114 220 IPR015300 -
Tpr1g1010 633 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Tpr1g1010 633 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Tpr1g1010 633 SMART B3_2 118 220 IPR003340 GO:0003677
Tpr1g1010 633 MobiDBLite consensus disorder prediction 568 613 - -
Tpr1g1010 633 CDD B3_DNA 117 218 IPR003340 GO:0003677
Tpr1g1010 633 Gene3D - 323 397 - -
Tpr1g1010 633 Gene3D - 116 220 IPR015300 -
Tpr1g1010 633 PANTHER AUXIN RESPONSE FACTOR 16 7 601 - -
Tpr1g1010 633 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr1g1010 633 MobiDBLite consensus disorder prediction 568 622 - -
Tpr1g1010 633 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 601 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1010 Tpr-Chr1 8844158 8847596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1010 1 607 B3 DNA Binding Superfamily AT4G30080 53.583 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr1g1010 B3 6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1010 - - mtr:MTR_1g094960 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1010 1 8844158 8847596 Tpr1g3954 1 44078388 44083922 ECH
Tpr1g3954 1 44078388 44083922 Tpr1g1010 1 8844158 8847596 ECH
Tpr1g1010 1 8844158 8847596 Tpr1g1010 1 8844158 8847596 ECH