Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0982 ATGGAAGAAGAAGATGATTATGAGGAGTATGTGCCTGTGGCCAAGCGTCGTGCCATGGAAGCTCAGAAAATTCTCCAACGAAAAGGGAAGGCCTCTGCTGCAATCGACGATGATTCTGAAAAACTAAAAGTGGTTGAAACTAAGCCAAGTCTTCTTGTTAAGGCGTCACAGTTAAAAAAAGATCAACCTGAAATCAGTGTCACAGAACAGATTGTTCAACAAGAGAAGGAGATGATTGAGAATTTACCAGATAATAAAACCCTAAAGTCGGTTCGTGAATTAGCTAAGGGGATCACTTATACAGAACCTTTGCCTACAGGGTGGAAACCTCCTTTGCATATAAGAAGGATGTCGAAGAAAGGTTGCGAATTGATTCAAAAACAGTGGCATATAATAGTTGATGGTGAAGAAATTCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCGGATCCTATTCTGAAGATGTTGAAAACCAAAGGTATTGTGCAGCCAACACCCATTCAGGTGCAAGGTCTTCCTGTTATCTTATCTGGGAGGGATATGATTGGAATTGCTTTCACGGGTTCTGGTAAAACTTTGGTTTTTGTGCTTCCGATGATCATGATGGCAATGCAGGAGGAAATTATGATGCCTATAGTTCCCGGGGAAGGTCCGTTTGGTCTGATTATTTGTCCATCAAGGGAACTTGCTAGGCAAACTTATGAAGTCATTGAACAATTCTTGTTACCTTTGAAGGAAGCTGGATATCCGGAGCTCAGGCCTTTGCTTTGTATCGGTGGAATTGATATGAGATCACAACTTGAGATTGTGAAGAAGGGGGTTCATATTGTTGTTGCCACTCCTGGGAGGTTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATCGGTTGGTAGATTTGGGATTCGAAGATGATATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTCTTATTTTCTGCTACTATGCCAACAAAAATTCAGAACTTTGCTAGAAGTGCTTTGGTAAAACCGATTATTGTCAATGTGGGACGTGCAGGAGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCGAAAATAGTTTACCTCCTTGAGTGCCTACAGAAAACCCCGCCTCCTGTTCTGATATTTTGTGAGAATAAGGCTGATGTGGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTAGAAGCCGTGGCTATCCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTTCATCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAAGGTTTAGATTTTCCTGATATTCAGCATGTGATCAACTATGACATGCCGGCTGAAATAGAAAATTATGTTCATAGGATTGGACGTACTGGAAGATGTGGCAAGACTGGTATAGCGACAACATTTATAAACAAGAACCAAAGTGAGACAACATTGCTTGATTTGAAACATCTTTTGCAAGAAGCAAAGCAAAGGATCCCCCCAGTTTTGGCTGAGCTTAATGATCCAATGGAAGATAATAATGACATCACAGACATAAGTGGTGTCAAGGGATGTGCATATTGTGGAGGGCTCGGTCATCGTATCGGTGATTGTCCCAAATTAGAACACCAGAAGAGTATGGCAATTGCAAATAATAGAAAGGATTATTTTGGATCCGGAGGTTACAGAGGGGAAATTTGA 1767 0.4097 MEEEDDYEEYVPVAKRRAMEAQKILQRKGKASAAIDDDSEKLKVVETKPSLLVKASQLKKDQPEISVTEQIVQQEKEMIENLPDNKTLKSVRELAKGITYTEPLPTGWKPPLHIRRMSKKGCELIQKQWHIIVDGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEQFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPMEDNNDITDISGVKGCAYCGGLGHRIGDCPKLEHQKSMAIANNRKDYFGSGGYRGEI* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0982 588 Pfam DEAD/DEAH box helicase 167 346 IPR011545 GO:0003676|GO:0005524
Tpr1g0982 588 SMART ultradead3 162 373 IPR014001 -
Tpr1g0982 588 Coils Coil 500 520 - -
Tpr1g0982 588 SMART helicmild6 408 489 IPR001650 -
Tpr1g0982 588 CDD SF2_C_DEAD 370 498 - -
Tpr1g0982 588 Gene3D - 111 362 IPR027417 -
Tpr1g0982 588 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 568 - -
Tpr1g0982 588 Gene3D - 368 530 IPR027417 -
Tpr1g0982 588 PANTHER BNAA06G38640D PROTEIN 8 568 - -
Tpr1g0982 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Tpr1g0982 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 504 IPR027417 -
Tpr1g0982 588 Pfam Helicase conserved C-terminal domain 382 489 IPR001650 -
Tpr1g0982 588 CDD DEADc_DDX41 154 359 IPR044113 GO:0000398|GO:0003724|GO:0005524
Tpr1g0982 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 529 IPR001650 -
Tpr1g0982 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 358 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0982 Tpr-Chr1 8541288 8546559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0982 141 528 Eukaryotic Initiation Factors Gene Family AT3G19760 31.043 1.85e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0982 K13116 - gmx:100814127 1109.36