Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0980 ATGGGGAGGAAAGGAAGTTGGTTTTCTTCTGTGAAGAAACTTTTCTTTATTTCTCCTTCCGATTCTTCCAAAAAAGAACAGAAACCTCATAATCATAATCATAATCATAAGGCGTCAAAGTTAACATGTTTTGGACATCATAATTATGATGATGCTGAGTGGAAAACTGGAGGAGTAGCACCAATAACTATTGTTCCTGTTCCATCTCTTCCTGAAAAAAAAGATAAAAAACCAAAAAAAAATAAGGAAGAGGATGAACAGAACAAACAAGCTTTTTCATTGATTTTAGCCACAGCCGTTGCTACCGGTGCCGCAGTTGCTGCTGCTCAGGCTGCTGCAGGGACCCCTCGTGTCAAAAGTATTCCTCGTTGTTACATTGGAAAATCAGCCGAAGAAATAGCCGCTATCAAAATTCAAACCGCCTACCGCGGATATCTGGCAAGGAGAACGTTGCGTGGATTGAGAGGCTTGGCGAGGTTGAAAGCATTGGTGAAAGGACAATCTGTTCAACGACAAGCGGCTACTACATTACAATGCATGCAAACTCTTTCGCGTTTACAATCGCAAGTTAGTGCGAGGAAGATCAGAATGTCAGAGGAGAATCAATCTTTCCAACGCCAACTTCAGCATAAACGTGAAAGGGAAATGGGCAAGTTACAAGCTCAACCTATTGGAGAAGACTGGGATTATAGCTCACAATCAAAGGAGCAAATCCAAGCAAAATTGTTGAACAGACAAATAGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAGCAAACATGGAGAAACTCTTCAAAACCTACAGATGCAACAATTATGGATCCTAACAATCCTCATTGGGGATGGAATTGGCTTGATAGATGGATGGCTTCAAGACCATGGGAAGGTCAAACCAATAAGGATCAACAGAATCATAGATCAGCAAAAGGTGCTGCAAGCCATACTATGTCAGTTGGAGAAATCTCCAAATTGTATGCTCAAAGAGATCAAAATCAAAATCAAAATCAAAATCAAGATAATAAAAATTCCCCTAGAAGCCAAAAACCGAATAATTCAAATCTACCTTCAAGGATACCTTCAATAACTAAAAGCGGAAAAACAAATACATCAAGTTTAAAGGGTGGTTCATGGGGTGGTGATGATGACTCAAAAATTAATTTCAATAACAAAAAATCTGAAACCAACCGAAGACATAGTAGCATTGGGGTGGCGCTATTGAAAGACGATGAAGTAAACTCGCCTGTAAAAGCTAAATCCAAAGTGCAAAGTCCTTCTGCAAAGAAGCAGCTTTCTTTCCCAGCAGCAGCAGCTTCTCCATCTGATTCTAGAAGGCATTCTGTTCCACCTAAAATTGGAGTAAATTCTAATAAGAATGTTGCTGCTACTAATCTCCCTGAAGTGAAAGTCAAAGGCAAAAATGGAGGCAGCAGATAG 1449 0.4003 MGRKGSWFSSVKKLFFISPSDSSKKEQKPHNHNHNHKASKLTCFGHHNYDDAEWKTGGVAPITIVPVPSLPEKKDKKPKKNKEEDEQNKQAFSLILATAVATGAAVAAAQAAAGTPRVKSIPRCYIGKSAEEIAAIKIQTAYRGYLARRTLRGLRGLARLKALVKGQSVQRQAATTLQCMQTLSRLQSQVSARKIRMSEENQSFQRQLQHKREREMGKLQAQPIGEDWDYSSQSKEQIQAKLLNRQIAAMRREKALAYASTHQQTWRNSSKPTDATIMDPNNPHWGWNWLDRWMASRPWEGQTNKDQQNHRSAKGAASHTMSVGEISKLYAQRDQNQNQNQNQDNKNSPRSQKPNNSNLPSRIPSITKSGKTNTSSLKGGSWGGDDDSKINFNNKKSETNRRHSSIGVALLKDDEVNSPVKAKSKVQSPSAKKQLSFPAAAASPSDSRRHSVPPKIGVNSNKNVAATNLPEVKVKGKNGGSR* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0980 482 MobiDBLite consensus disorder prediction 261 277 - -
Tpr1g0980 482 Coils Coil 194 214 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 300 320 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 335 382 - -
Tpr1g0980 482 SMART iq_5 130 152 IPR000048 GO:0005515
Tpr1g0980 482 Gene3D iswi atpase 128 155 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 70 88 - -
Tpr1g0980 482 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515
Tpr1g0980 482 MobiDBLite consensus disorder prediction 335 381 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 418 482 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 65 88 - -
Tpr1g0980 482 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Tpr1g0980 482 PANTHER IQ-DOMAIN 5-RELATED 1 473 - -
Tpr1g0980 482 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 473 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 300 316 - -
Tpr1g0980 482 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0980 Tpr-Chr1 8524673 8526998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0980 1 462 IQD Protein Family AT3G52290 41.068 1.78e-85 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0980 - - gmx:100807725 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0980 1 8524673 8526998 Tpr1g0980 1 8524673 8526998 ECH