Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0977 ATGGAACAAAAAATGAAAACCACAACTTCTCCTCCTCAATTACCAATCCATATTCCCATTCACACCATGCTATCAAACTCAACACCATCTTCATCTTCTTCACCTCCTTTACAATCTCCCACGCCTTTCCCTTCACCGCCTTCTCAATATTCTCCTCCTTCTGCCACTCTTCGACCACCATCTCCTCCTCCACCAATTGTGGTTAGCCCTTGCGCTGCGTGCAAGATCCTTCGTCGCAGGTGTGTTGAGAAGTGTGTGTTAGCTCCTTATTTTCCTCCGACCGATCCACTCAAGTTCACAATTGCTCATAGAGTTTTTGGAGCTAGCAACATCATTAAGTTTTTGCAGGAACTACCTGAACCTCAAAGAGCAGATGCTGTTAGCAGCATGGTTTATGAAGCAAATGCTAGGATAAGGGACCCAGTTTATGGTTGTGCAGGTGCAATATGTCAACTTCAAAAACAAGTTAGTGAACTACAAACACAGCTAGCAAAAGCACAAGCTGAGATAGTGAACATGCATTGCCAACAAGCAAATTTAGTGGCATTAATTTGCATGGAAATGAGTAATCAATCATCACCACAAGACCATAACATGATAATTAATCAGCCACAACCTCATGTTGATATGAGTTGTTTCTTAGAAGACAACAATTTTGGGTCTGCTTGGGAGCCTCTATGGACATGA 687 0.425 MEQKMKTTTSPPQLPIHIPIHTMLSNSTPSSSSSPPLQSPTPFPSPPSQYSPPSATLRPPSPPPPIVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLAKAQAEIVNMHCQQANLVALICMEMSNQSSPQDHNMIINQPQPHVDMSCFLEDNNFGSAWEPLWT* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0977 228 Pfam Lateral organ boundaries (LOB) domain 70 167 IPR004883 -
Tpr1g0977 228 Coils Coil 149 176 - -
Tpr1g0977 228 ProSiteProfiles LOB domain profile. 69 170 IPR004883 -
Tpr1g0977 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 57 225 - -
Tpr1g0977 228 MobiDBLite consensus disorder prediction 35 60 - -
Tpr1g0977 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 57 225 - -
Tpr1g0977 228 MobiDBLite consensus disorder prediction 1 60 - -
Tpr1g0977 228 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0977 Tpr-Chr1 8481798 8483685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0977 66 228 AS2 family AT1G07900 68.263 7.88e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr1g0977 LOB 6.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0977 - - gmx:100806667 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0977 1 8481798 8483685 Tpr1g0977 1 8481798 8483685 ECH