Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0967 ATGTCTGGCAATAATTCAAGTTGCACCATTTACATAGGCAATCTGGATGAGAGGGTGACAGACAGAGTCTTGTATGATATATTAATTCAAGCTGGACGAGTGGTAGACTTGCACATCGTTAAAGATAAGGAATCGGAGAAGCCAAAAGGCTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCAGACTATGCTGTCAAACTTTTCTCAGGCCTTGTAACACTGTACAAACGAACGCTGAAGTTTGCGTCTGCTAATAAACAGATATCTGGAAGGGACAAAAATACCCCTAATAGTTCTACAGCTACTACACCCACATCAAATTCTTCTCAACGACCAAGGCCTTACCCTGTGCAAGTGCAAATAAACAGTTCAGAAAATTTTCAGCATCCCACTAGGCAATCAATACCTGACCGATTCTCAGATCATGCAGTAAATTATTCACAAGTTCCTCCTCCTCATCGTGTAACTGACCAACCTAGTGGGTATGGATCTCACTACAGCAGCAACCATATGGATTACAGTCGGAGAGCTTTTGGGGAGGCATTGGATAACGCCACCCGTTCTAGTTCTAGGTCACGCCGCCCTGATGGAGTTAGCCCAATTTCTTATCCACCTTACTAA 624 0.4327 MSGNNSSCTIYIGNLDERVTDRVLYDILIQAGRVVDLHIVKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYKRTLKFASANKQISGRDKNTPNSSTATTPTSNSSQRPRPYPVQVQINSSENFQHPTRQSIPDRFSDHAVNYSQVPPPHRVTDQPSGYGSHYSSNHMDYSRRAFGEALDNATRSSSRSRRPDGVSPISYPPY* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0967 207 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 87 IPR000504 GO:0003723
Tpr1g0967 207 SMART rrm1_1 9 83 IPR000504 GO:0003723
Tpr1g0967 207 MobiDBLite consensus disorder prediction 88 115 - -
Tpr1g0967 207 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 80 IPR000504 GO:0003723
Tpr1g0967 207 SUPERFAMILY RNA-binding domain, RBD 5 80 IPR035979 GO:0003676
Tpr1g0967 207 Gene3D - 2 96 IPR012677 -
Tpr1g0967 207 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 205 - -
Tpr1g0967 207 PANTHER OS01G0876500 PROTEIN 1 205 - -
Tpr1g0967 207 MobiDBLite consensus disorder prediction 149 207 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0967 10 97 Eukaryotic Initiation Factors Gene Family AT1G22760 27.273 3.29e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0967 K12831 - gmx:100803118 291.197