Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0964 ATGGAAGATTCAGAGGAAGATGAGCTTCTGAATCTTAGCCTTTCATTTAATAGAGAAAGAAAAAAGAAAGGAAAAATCATCACAAGTAGAGAAAACAACAATGTTTGTAGTACTAAGGAGAGAAACCCCTATGAAGGGTATGAAGGAAAAATCTTTAGATTACTTGAAATGAGAGAACAAATGATAAGAAAAAACAGTCTGAACAACATTGAAGATTCAAATGGTCTTCCATTAATTCACTTACTCCTGACAACAGCCACTTCAGTCGACGAAAACAAGTTCGATTCATCGCTCGAAAACCTAACCGATCTTTACCAAATAGTTTCATTAACTGGAGATTCAGTTCAACGAGTTGTAGCCTATTTCTCGGATGGTTTAACCGCGAAACTGTTGACAAAAAAATCACCATTCTATGAAATGTTAATGGAAGAACCAACAATAGACGAAGAATTTCTGGCATTCACAGATCTCTATAGAGTCTCACCGTATTATCAATTTGCTCATTTCACAGCGAATCAAGTTATCTTAGAAGCATTTGAAAAAGAAGAAGAGAAAAATAACCGTTCGATTCATGTGATTGATTTCGATGTTTCATACGGTTTTCAATGGCCTTGTTTGATTCAATCTCTTTCGGAGAAAGCAACAAGTGGAAACAAGATCTCTCTCAGAATAACCGGATTCGGTAAGAATTTAAAACAACTTCAAGAAACTGAATCTAGGTTAGTTAGTTTCGCCAAAAGTTTCTGTAACATTGTTTTCGAGTTTCAAGGTTTATTAAGAGGATCAAGAGTAATTAACTTAAGGAAGAAGAAAAATGAAACTGTGGCAGTTAATTTAGTTTCTTATTTAAACAAATTAACTTGTTTAATGAAAATAACTGACACATTGGGATTTGTTCATTCTCTTAACCCTTCAATCATCATACTTGTTGAACAAGAAGGTAGTAAAAATCCTTCTACAACTTTCTTATCAAGATTCACAGACACATTACATTATTTTGCAGCTATGTTTGATTCACTTGATGATTGTTTACCACTTGAGAGTATTGAAAGGTTAAGAATTGAGAAAAAACTTTTTGGTAAACAGATTAAGACTATGCTTAATAATAACTATGATGTTGATAATCATGATGCTTTTGGTTTTGGTGGTGGTGTTGAATGTGCAAAATATGAAAAAATGGAAACATGGAAAACTAGAATGGAAAATCATGGATTTGTTGGTATCAAAATGAGTTCAAAGTGTTTGATACAAGCTAAATTGTTACTTAAGATGAGGACTAATTATTCTCCACTACAATTCGAGGAAGAAACTGGTGGCGGTGGAGGTGGTGGTGGTGGTGGTGGTTTCAGGGTTTCTGAAAGAGATGATGGAAAAGCTATTTCTTTAGGATGGCAAAATAGGTTTTTGCTAACTGTGTCAGCATGGCAATCACTTTGA 1437 0.3403 MEDSEEDELLNLSLSFNRERKKKGKIITSRENNNVCSTKERNPYEGYEGKIFRLLEMREQMIRKNSLNNIEDSNGLPLIHLLLTTATSVDENKFDSSLENLTDLYQIVSLTGDSVQRVVAYFSDGLTAKLLTKKSPFYEMLMEEPTIDEEFLAFTDLYRVSPYYQFAHFTANQVILEAFEKEEEKNNRSIHVIDFDVSYGFQWPCLIQSLSEKATSGNKISLRITGFGKNLKQLQETESRLVSFAKSFCNIVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNKLTCLMKITDTLGFVHSLNPSIIILVEQEGSKNPSTTFLSRFTDTLHYFAAMFDSLDDCLPLESIERLRIEKKLFGKQIKTMLNNNYDVDNHDAFGFGGGVECAKYEKMETWKTRMENHGFVGIKMSSKCLIQAKLLLKMRTNYSPLQFEEETGGGGGGGGGGGFRVSERDDGKAISLGWQNRFLLTVSAWQSL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0964 478 Pfam GRAS domain family 78 476 IPR005202 -
Tpr1g0964 478 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 476 IPR005202 -
Tpr1g0964 478 ProSiteProfiles GRAS family profile. 69 476 IPR005202 -
Tpr1g0964 478 PANTHER OSJNBA0084A10.13 PROTEIN 8 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0964 Tpr-Chr1 8335473 8337295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0964 54 475 GRAS Transcription Factor Family AT3G54220 32.414 7.47e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tpr1g0964 GRAS 5.9e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0964 - - gmx:100809458 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0964 1 8335473 8337295 Tpr1g0964 1 8335473 8337295 ECH