Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0955 ATGAACATGTTCAGGTATGAATACACAACAACTTTCCTACTCTTGTTTTTGTTATGTCCTATGGTTTTGTCTTTACTGTCTCAAAACCAAACAAATACCATGATCAATCTCTATAATCTTCTTAATCACTCTGATTGGAATCCCAGCAAAAATTCTAATCCATGTTCATGGAAAGGTGTCACTTGTGACACTACCAATTCATCTGTCATCAATATTGTCCTACATGGTTCTGCTCTCTCTTCACAATCTCTTCCAGTTCTTTGCAAAATTGAAACTTTGCAACACCTTGATGTTTCTAATAACCATCTGAACTCTATCCCAGATGGGTTTCTTTCTGCATGTGGAAAAATTGAGAATTTAAAGCTTTTAAATTTCAGTGGAAATGTGTTAAGTGGTTTTTTGCCTACTTTTCATGGTTTTGGTAGATTGGAATCACTTGACATGTCTTTCAATCGTTTGAGTGGAACCATTGGTTTGCAGTTAGATGGATTGGTTAGTCTCAAGTTTCTTAATCTTGGTTACAATAACTTCAGTGGGAACCTTCCTACTAATTTGGGAAGGTCCATGGTTTTGGAGCAGCTTGTGCTTTCAAACAATAATTTTGAAGGAACTATCCCTGATCAAATTTTGAGCTACAAAAATTTGACTGTGATTGATTTTATGGCAAATAAGCTTTCAGGGTCTATTCCTTTAAATATTGGAAAGCTTTCCAAATTGGGAACTTTGAGTCTTTCCTCTAATAGACTAGGTGGCAAAATCCCAATGTCAGTTACGAACATCACAACACTAGAAAGATTTGCAGCTAATCAAAATTATTTTACTGGTGCTGTTCCTCCTGGAATTACAAAATTTCTCAGTTATTTGGATCTTAGTTATAATAATTTATCTGAGTCTATTCCAGAAGGTCTTTTATCTCCACCACAGATATTGTTTGTAGATTTGTCCTATAACAATTTAATAGGTCATGTGCCTGCAAATATTTCAACTAGTTTAGTCAGGTTGAGATTGGGGGGAAATTCTCTGACAGGAGAGGTTCCTTCAGGTATTTGCGAAGCCATTCGTGACAACCAATTGACATACATGGAACTGGACAACAATCAGTTGAAAGGTTTGATACCTCCGGGATTAGGTTCTTGTAAGAAATTGGCCTTGTTGAATTTGGCTGAGAATCAATTGACTGGTGCATTGCCACCGGAACTTGGTAATCTTAGCCATCTTCAAGTCTTGCAGCTTCAAACAAACAAGCTCAATAGTACTATCCCTATTCAAATTTCCCAACTTCAAAAGTTGTCTACCTTGAATTTGAGCTATAATTCTTTTGATGGACCAATTCCATCTGATATGCCAGTCAACCTTACATTCCTTGACTTGCAAGGGAACAATCTCAACGGGTCTATACCATCGTCCATTGGAAACTTGCGAAATCTTTTAGATGTCCAACTTGGAGAAAATCAGCTAAGCGGTGATATTCCTCAAATGCCTTCGAGTCTACAGATTGCATTGAATCTCAGTAGCAATCACTTTAGTGGAGTTATTCCTAGTAGTTTTGGTGATTTGGCTAGCCTAGAAATTTTGGATCTCTCAAATAACAACTTCTCCGGGCCAATTCCTCCGTCTCTAACTAAAATGTCAGCATTGACACAGTTGCAACTATCAAACAATAATCTATCAGGTTTCCTTCCATCATTTGCTCCATACGTTAATGTTGATATAGAAGGAAACAATGTCAAGAATAGAACTAATGTACCAGTTAACAATTCTCCAAGAAAGAAAGGGAATTCTGTTGTTGCCGCTGTTCTTATTGCAATTGCTGCTGCTATTTTTGTGGTTGGCATGGTCACCCTTCTGGTTGTATTGATCTCACGGCACTATTGCAAGGTTACCGATGAACGAGTACAGTCAAATGAAATTGAAAATCTTGACATTCCTCAGGTCATCCAGAGTAATTTGTCAACTCCAAATGGAATCCACAGATCAAACATTGATCTCTCCAAAGCCATGGAAGCTGTTGCCGAACCATCAAACGTAACTCTAAAAACCAAGTTTTCGACTTACTATAAGGCTGTTATGCCATCTGGATCAATCTATTTTGCCAAGAAGCTGAACTGGTGTGACAAGATATTTCCGGTGAGTAGTGTGGATAAATTTGGGAAAGAGTTGGATGCATTGGCAAAGTTGAACAATTCAAATGTGATGATTCCTCTAGGCTATATCGTGTCCACTAACAATGCTTATGTATTATACGAATTTGTGTCGAACGGCTCTCTCTTCGATGTGCTTCACGGGAGCATGGAAAACTCTTTAGATTGGGCTAGCAGATATAGTATAGCTGTTGGTGTGGCTCAAGGTCTCTCTTTTCTGCATGGATTTGCATCTGGTCCAATACTTCTCCTTGATTTATCAAGTAAAAGTATTATGCTGAAATCACTCAAGGAACCTCTAGTCGGCGATATTGAACACTACAAGGTGATTGATCCTTCAAAGAGTACCGGGAGTTTTTCTGCAGTTGCTGGTTCTGTTGGCTACATTCCTCCAGAGTATGCATACACAATGAGAGTAACAGTGGCAGGAAATGTGTATAGCTTTGGTGTAATTCTACTGGAATTGCTAACAGGCAAATCTGCAGTGACCGAGGGAACTGAATTGGTGAAGTTGGTTTTGCGTAATTCAAGAAATCAAGATCACATTCTTGATCCTAATGTTAGTAGAACATCACAGGCTGTTAGAAACCAAATGCTAGCAATTCTGGAGATCGCTCTTGTTTGTGTTAGCACATCCCCTGATGCAAGACCAAAGATGAAAACTGTGTTAAGAATGTTGCTGAATGCCAGATAG 2835 0.3841 MNMFRYEYTTTFLLLFLLCPMVLSLLSQNQTNTMINLYNLLNHSDWNPSKNSNPCSWKGVTCDTTNSSVINIVLHGSALSSQSLPVLCKIETLQHLDVSNNHLNSIPDGFLSACGKIENLKLLNFSGNVLSGFLPTFHGFGRLESLDMSFNRLSGTIGLQLDGLVSLKFLNLGYNNFSGNLPTNLGRSMVLEQLVLSNNNFEGTIPDQILSYKNLTVIDFMANKLSGSIPLNIGKLSKLGTLSLSSNRLGGKIPMSVTNITTLERFAANQNYFTGAVPPGITKFLSYLDLSYNNLSESIPEGLLSPPQILFVDLSYNNLIGHVPANISTSLVRLRLGGNSLTGEVPSGICEAIRDNQLTYMELDNNQLKGLIPPGLGSCKKLALLNLAENQLTGALPPELGNLSHLQVLQLQTNKLNSTIPIQISQLQKLSTLNLSYNSFDGPIPSDMPVNLTFLDLQGNNLNGSIPSSIGNLRNLLDVQLGENQLSGDIPQMPSSLQIALNLSSNHFSGVIPSSFGDLASLEILDLSNNNFSGPIPPSLTKMSALTQLQLSNNNLSGFLPSFAPYVNVDIEGNNVKNRTNVPVNNSPRKKGNSVVAAVLIAIAAAIFVVGMVTLLVVLISRHYCKVTDERVQSNEIENLDIPQVIQSNLSTPNGIHRSNIDLSKAMEAVAEPSNVTLKTKFSTYYKAVMPSGSIYFAKKLNWCDKIFPVSSVDKFGKELDALAKLNNSNVMIPLGYIVSTNNAYVLYEFVSNGSLFDVLHGSMENSLDWASRYSIAVGVAQGLSFLHGFASGPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGSFSAVAGSVGYIPPEYAYTMRVTVAGNVYSFGVILLELLTGKSAVTEGTELVKLVLRNSRNQDHILDPNVSRTSQAVRNQMLAILEIALVCVSTSPDARPKMKTVLRMLLNAR* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0955 944 Pfam Leucine rich repeat 501 556 IPR001611 GO:0005515
Tpr1g0955 944 Pfam Leucine rich repeat 92 153 IPR001611 GO:0005515
Tpr1g0955 944 SUPERFAMILY RNI-like 170 562 - -
Tpr1g0955 944 PANTHER F12K21.25 10 941 - -
Tpr1g0955 944 Gene3D Ribonuclease Inhibitor 498 580 IPR032675 -
Tpr1g0955 944 Gene3D Ribonuclease Inhibitor 450 497 IPR032675 -
Tpr1g0955 944 Gene3D Ribonuclease Inhibitor 23 82 IPR032675 -
Tpr1g0955 944 PRINTS Leucine-rich repeat signature 143 156 - -
Tpr1g0955 944 PRINTS Leucine-rich repeat signature 519 532 - -
Tpr1g0955 944 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 941 - -
Tpr1g0955 944 Gene3D Phosphorylase Kinase; domain 1 639 750 - -
Tpr1g0955 944 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Tpr1g0955 944 Gene3D Ribonuclease Inhibitor 83 449 IPR032675 -
Tpr1g0955 944 Pfam Protein tyrosine and serine/threonine kinase 713 940 IPR001245 GO:0004672|GO:0006468
Tpr1g0955 944 ProSiteProfiles Protein kinase domain profile. 671 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0955 944 SUPERFAMILY Protein kinase-like (PK-like) 682 940 IPR011009 -
Tpr1g0955 944 Gene3D Transferase(Phosphotransferase) domain 1 751 944 - -
Tpr1g0955 944 Pfam Leucine rich repeat N-terminal domain 31 63 IPR013210 -
Tpr1g0955 944 SMART LRR_typ_2 403 427 IPR003591 -
Tpr1g0955 944 SMART LRR_typ_2 90 113 IPR003591 -
Tpr1g0955 944 SMART LRR_typ_2 450 473 IPR003591 -
Tpr1g0955 944 SMART LRR_typ_2 282 306 IPR003591 -
Tpr1g0955 944 SMART LRR_typ_2 543 565 IPR003591 -
Tpr1g0955 944 SMART LRR_typ_2 164 188 IPR003591 -
Tpr1g0955 944 SMART LRR_typ_2 519 542 IPR003591 -
Tpr1g0955 944 SUPERFAMILY L domain-like 51 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0955 Tpr-Chr1 8253755 8257408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0955 143 944 Receptor kinase-like Gene Family AT2G41820 38.590 8.61e-145 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr1g0955 PK_Tyr_Ser-Thr 3.7e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0955 - - gmx:100796647 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0955 1 8253755 8257408 Tpr1g0955 1 8253755 8257408 ECH