Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0954 ATGGGAGATTCCTACTTTAGTAAAGAGGATAACCAAATTAGTGCTTCCTCAGAACAAACCGAGGACAGTGCATATCTCTCAGCAATGTTAGTTACCACTAATCTTGTTTATTCAGCAGTGTTAAATGCTGCTATTGATCTCAATTTATTTGAGATCATAGCTAAGGCAACACCATGTGGTGCTTTCATGTCACCATCAGAAATTGCTTCTAAATTGCCACAATCAACCCAACACTCGGACTTGTCTAATAGGCTTGACCGAATGTTACGTTTGCTTGCTAGTTATTCCATTCTTATATCTTTTACTCGAACCACCGAGAATGGTACCGAGAGAGTTTATGGCCTCTCGATGGTTGGAAAATGCTTTGTCCCTGATGAAAGTGGAGGCTCCTTGGCATCAATCACCTCATTTATATACTCTCCTGCATTGTTACAAGTTTGGGCGAATTTTAAGGAAGTTGTGGTTGCTGAAAACATTGATGTGTTCAAGAAAATTCATGGAGTGACAAAGTACGAATACATGGGAAAGGATGAAAAAATGAACCAAATATTTAACAAATCAATGGTTGATATTTGTGCAATAGAGATGAAAAGAATGCTTGAAATATACACTGGATTTGAGGGAATATCAACATTGGTTGATGTTGGCGGTGGAAGTGGACAAAACCTCAAAATGATAATTTCCAAGTACCCTTTAATTAAGGGAATTAATTTTGATCTGCCTCATGTTATTGAAAATGCACAACCACTTTCAGGGATTGAACATGTTGGAGGAGATATGTTTGCAAGCATTCCACATGGTGATGCCATGATATTAAAGGGTGTATGTCATAATTGGTCAGATGAAAAATGCACAGAAATTTTAAGCAAATGTCACAAAGCTTTGTCACCAAATGGGAAGGTGATTATAGTGGAGTTCATATTGCAAGAAGAACCAACACCATCCGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTCATCACAAGTGGTGGAAGAGAAAGAACTGAGAAACAATATGAGAAATTGGGTAAACTCTCTGGATTTTCAAAATTCCAAGTTGCTTGCCGCGCTTTCTCCTCCAGTTTTGGAGTCATGGAACTTTATAAATACTAG 1122 0.3761 MGDSYFSKEDNQISASSEQTEDSAYLSAMLVTTNLVYSAVLNAAIDLNLFEIIAKATPCGAFMSPSEIASKLPQSTQHSDLSNRLDRMLRLLASYSILISFTRTTENGTERVYGLSMVGKCFVPDESGGSLASITSFIYSPALLQVWANFKEVVVAENIDVFKKIHGVTKYEYMGKDEKMNQIFNKSMVDICAIEMKRMLEIYTGFEGISTLVDVGGGSGQNLKMIISKYPLIKGINFDLPHVIENAQPLSGIEHVGGDMFASIPHGDAMILKGVCHNWSDEKCTEILSKCHKALSPNGKVIIVEFILQEEPTPSEESKLVSTLDNLMFITSGGRERTEKQYEKLGKLSGFSKFQVACRAFSSSFGVMELYKY* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0954 373 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 372 - -
Tpr1g0954 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 358 IPR029063 -
Tpr1g0954 373 Pfam O-methyltransferase domain 147 352 IPR001077 GO:0008171
Tpr1g0954 373 SUPERFAMILY "Winged helix" DNA-binding domain 22 126 IPR036390 -
Tpr1g0954 373 Gene3D - 36 199 IPR036388 -
Tpr1g0954 373 PIRSF O-mtase 5 372 IPR016461 GO:0008168
Tpr1g0954 373 PANTHER O-METHYLTRANSFERASE 1 372 IPR016461 GO:0008168
Tpr1g0954 373 Gene3D Vaccinia Virus protein VP39 181 360 IPR029063 -
Tpr1g0954 373 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 372 IPR016461 GO:0008168
Tpr1g0954 373 CDD AdoMet_MTases 211 308 - -
Tpr1g0954 373 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0954 Tpr-Chr1 8237478 8244914 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0954 20 372 Monolignol Biosynthesis Gene Families AT5G54160 46.479 5.29e-105 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0954 - - ag:AAB48059 614.379