Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0953 ATGGGAGATTCCTACTTTGCTAAAGAGGATAACCAAATTAGTGTTGCCTCTGAACAAATTGAGGATAGTGCTTGTCTTTCAGCAATGGTACTTACCACTAATCTTGTTTATCCAGCAGTGTTAAATGCTGCTATTGATCTTAATTTATTTGAGATCATAGCTAAGGCAACACCGCCCGGTGCTTTCATGTCACCATCAGAAATTGCTTCTAAATTGCCACAATCAACTCAACACTCGGACTTGTCTAATAGGCTTGACCGAATGTTGCGTTTGCTTGCTAGTTATTCCGTTCTTACTTCTGCCACCCGAACTATCGAGGACGGTAGCACCGAGAGAGTTTACGGACTCTCAATGGTCGGAAAATACCTTGTCCCCGATGAAACTAGAGGATCATTGGCTTCATTCACTACATTTATGTGTTATCCTGCATTGTTGCAAGTTTGGATGAACTTTAAGGAAGCAGTGGTTGCTGAAGACATTGATTTGTTCAAGAACATTCATGGAGTGACAAAGTATGAATACATGGGAAAGGATAAGAAAATGAACCAAATATTTAACAAATCAATGGTTGATGTTTGTGCAACAGAGATGAAAAGAATGCTTGAAATATACAATGGATTTCAAGGAATATCAACATTAGTTGATGTTGGTGGTGGAAGTGGACAAAATCTAAAAATGATTATATCTAAATACCCATCAATTAAGGGAATTAATTTTGATCTGCCTCAGGTTATTGAAAATGCACCACCAATTCCAGGGATTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATGATACTAAAGGCTGTGTGTCACAATTGGTCAGATGAAAAGTGCATAGAATTTTTAAGTAATTGTCACAAAGCTCTTTCACCAAATGGAAAATTGATTGTTGTGGAGTTCATATTGCCAGAAGAACCAACAGCAACTGAAGAATCTAAACTTGTTTCAACTCTTGATAATCTCATGTTTATCACAGTTGGTGGAAGGGAAAGAACTGAGAAACAATGGGAGAATTTGAGCAAACTCTCTGGATTTTCCAAATTTCAAGTGGCTTGTTGTGCTTTCTCAAGTTTAGGAATCATGGAGTTTTATAAATGA 1119 0.3789 MGDSYFAKEDNQISVASEQIEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPQSTQHSDLSNRLDRMLRLLASYSVLTSATRTIEDGSTERVYGLSMVGKYLVPDETRGSLASFTTFMCYPALLQVWMNFKEAVVAEDIDLFKNIHGVTKYEYMGKDKKMNQIFNKSMVDVCATEMKRMLEIYNGFQGISTLVDVGGGSGQNLKMIISKYPSIKGINFDLPQVIENAPPIPGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKLIVVEFILPEEPTATEESKLVSTLDNLMFITVGGRERTEKQWENLSKLSGFSKFQVACCAFSSLGIMEFYK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0953 372 Gene3D Vaccinia Virus protein VP39 182 361 IPR029063 -
Tpr1g0953 372 Gene3D - 36 200 IPR036388 -
Tpr1g0953 372 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 372 - -
Tpr1g0953 372 PANTHER O-METHYLTRANSFERASE 1 372 IPR016461 GO:0008168
Tpr1g0953 372 PIRSF O-mtase 5 372 IPR016461 GO:0008168
Tpr1g0953 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 370 IPR029063 -
Tpr1g0953 372 Pfam O-methyltransferase domain 148 353 IPR001077 GO:0008171
Tpr1g0953 372 CDD AdoMet_MTases 212 309 - -
Tpr1g0953 372 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Tpr1g0953 372 SUPERFAMILY "Winged helix" DNA-binding domain 22 127 IPR036390 -
Tpr1g0953 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 372 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0953 Tpr-Chr1 8229570 8231931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0953 21 372 Monolignol Biosynthesis Gene Families AT5G54160 47.592 8.59e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0953 - - ag:AAB48059 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0953 1 8229570 8231931 Tpr1g0953 1 8229570 8231931 ECH