Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0947 ATGACATCAACTCAAATTTCTGAGAGGTCATCAACATCAATGGATATGGAATCATGTGTACCTCCAGGATTTAGATTTCATCCAACAGAAGAGGAACTTGTAGGGTATTACCTTAACAGGAAGATTAACTCACTCAAAATTGATCTAGATGTTATTGTTGAGGTTGATCTCTACAAAATTGAACCATGGGATATACAAGATAGATGCAAATTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGAGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGAGATAAAGCTGTAACTTCCAAAAACAGAATTATAGGAATGAGGAAGACTCTTGTTTTTTATAAGGGACGTGCCCCTAATGGAAGGAAAACTGATTGGATTATGCATGAATATAGACATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCAGAGCATTTAAGAAGCCAAGTCCAAGTCATAGGCCAGGTTATGAACCATGGTATAGTAATACTAATCAACAACCACAGTATTTCAGAGATGATCAAAGCTATGCAACTACAAGACCTTTATCAATCACAGATATTTTACACGAAAATCGTTTACTCCTTCAACATAATCCTACAGCTGAAGAAGGTACAAGTTTTAGTCACCACTTTAGTAACAATGATCAACAGTTTCTATCAAACCAAACTACTCTTGTTATGGACAACAAACAACTCATTGAACTTCCACAGTTAGATAGTCCAACAACAAGTTTTGCTATCAAAGAATGTAATCAAAATGGATTCATCACAAATGAAGATCAATGCAGTGATGAAAGGAGTAACAATGGATCACAAGTAATTGATTGGAAAAGTTTGGATAATTTGTTCACTTCACATCAATTTACAGATACAACTAATTACTTTTCAAATCCATTGATGATGATACCTCATAATCAGCATGATCAAGCTAATCATATATTAGGATGCTTTCCTGATTCATAA 1029 0.3567 MTSTQISERSSTSMDMESCVPPGFRFHPTEEELVGYYLNRKINSLKIDLDVIVEVDLYKIEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVTSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFKKPSPSHRPGYEPWYSNTNQQPQYFRDDQSYATTRPLSITDILHENRLLLQHNPTAEEGTSFSHHFSNNDQQFLSNQTTLVMDNKQLIELPQLDSPTTSFAIKECNQNGFITNEDQCSDERSNNGSQVIDWKSLDNLFTSHQFTDTTNYFSNPLMMIPHNQHDQANHILGCFPDS* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0947 342 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Tpr1g0947 342 ProSiteProfiles NAC domain profile. 20 169 IPR003441 GO:0003677|GO:0006355
Tpr1g0947 342 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Tpr1g0947 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 18 316 - -
Tpr1g0947 342 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 316 - -
Tpr1g0947 342 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0947 Tpr-Chr1 8171616 8175452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0947 16 342 NAC Transcription Factor Family AT1G71930 52.450 2.08e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr1g0947 NAM 5.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0947 - - gmx:100812904 519.235