Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0938 ATGGGTACCTCAAATCTTCGCTTATTTTTCTTCTCTCTGCTGAGTTTCTGTGCCATGGCGGCTGCTAAGGTCGTGCTGATTGGGAACAACACCACTCTTTCATTCGATGATATTGAAGCTAATTTCTCTCCGTCAGTTAAAGGGTCTGGAGAATATGGAGCCTTATTCTTGGCAGAGCCGCTTGATGCATGTACACAACTTACAAATAAAGCTATACAACTTCCCAATGATAGTTCACCTTTTGTTTTGATGATTAGAGGAGGGTGTAGCTTTGAGGACAAGGTTAGGGTCGCACAAAATGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAAGATGGTGGCATCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATTAGAATACATGCGGTATTTGTATCAAAAGCTTCGGGTGAAATACTAATGAAATACACTGGTTTGACTAATGTGGAAACATGGCTCATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCGATTTCATTTATTTCCCTGCTAGCTATGTCTGCAGTGCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGGGCCTCGAGGTTCTTCTCATGTCCGTGAATTTCATGGTATGAGTAGTCGTCTAGTGAAAGCAATGCCAAGTTTGATTTTTACTTCTGCTTTGGAAGATAACTGCACATCAAGAACATGTGCTATCTGCCTTGAAGACTATTGCGTTGGAGAGAAACTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCTTGGCTTACTTCGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGATGCAAGAACAGGTCTGTCTGATCCACCACCTTCAGAATCCACACCTCTGCTGTCATCAACGCCGTCATCTGTGACATCTTCTTTCGTGTCTTCTATGAGGTCATCGTTTGCTTCTTCTTCTGCAATACAAATTGTTTCACAGTCGCCGTCTGCTTCTCGTAACCACTCTTTAGCTAGTACCCCTTACATGCAACCATCTCTAAGGTCCTACCGCCAGTCCCCCTCCCTGAGCGTCAGCCGTAGCTCCGTAGATCTTAGGAATGCATCCCAAAGATCTCTAGCTTCACACATGAATTCACCGCGTTCCATCGGTTATCCATCTTTATCATCTCTTAACTCAAGGTACATGTCTTCACACATGCCAAGTCCAAGCAATGGTTCAGTTAGTTTCCTCGCTTCATCCAGTCACCAGCAACATCCACTCCGTTATAGCGAGTCAGCGTCAAGCTTCTCGCCATTTGCGTCTGCCAACTCCCTTCCGGATTGTTGA 1323 0.4528 MGTSNLRLFFFSLLSFCAMAAAKVVLIGNNTTLSFDDIEANFSPSVKGSGEYGALFLAEPLDACTQLTNKAIQLPNDSSPFVLMIRGGCSFEDKVRVAQNAGYKAAIVYDNEDGGILVAMAGNSAGIRIHAVFVSKASGEILMKYTGLTNVETWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRGPRGSSHVREFHGMSSRLVKAMPSLIFTSALEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLSSTPSSVTSSFVSSMRSSFASSSAIQIVSQSPSASRNHSLASTPYMQPSLRSYRQSPSLSVSRSSVDLRNASQRSLASHMNSPRSIGYPSLSSLNSRYMSSHMPSPSNGSVSFLASSSHQQHPLRYSESASSFSPFASANSLPDC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0938 440 CDD PA_C_RZF_like 13 163 IPR044744 -
Tpr1g0938 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 281 IPR013083 -
Tpr1g0938 440 Gene3D - 17 153 - -
Tpr1g0938 440 Pfam Ring finger domain 233 276 IPR001841 -
Tpr1g0938 440 Pfam PA domain 81 142 IPR003137 -
Tpr1g0938 440 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Tpr1g0938 440 SUPERFAMILY RING/U-box 223 288 - -
Tpr1g0938 440 MobiDBLite consensus disorder prediction 330 378 - -
Tpr1g0938 440 SUPERFAMILY PA domain 81 145 IPR046450 -
Tpr1g0938 440 CDD mRING-H2-C3H2C2D_ZSWM2 233 276 - -
Tpr1g0938 440 MobiDBLite consensus disorder prediction 419 440 - -
Tpr1g0938 440 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 364 - -
Tpr1g0938 440 SMART ring_2 234 275 IPR001841 -
Tpr1g0938 440 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0938 Tpr-Chr1 8065006 8069511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0938 21 439 C3H Transcription Factor Family AT1G22670 50.235 1.57e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0938 K15692 - gmx:100791248 631.713