Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0928 ATGGAAACGAATTTAAGATTCTTGGCTGGATCCTTCGATTACTCCGCAGTCATTTCATTTCATTTCTTCGTAGAAGATACACCATTATCTGTTTTGCATAATCAGTATCCCAAGTGGCCTGACCATGGAGTTCCAAATGATACTTTAGCTGTGCGTGAAATTTTGAAAAGATTGTACCATTTACCTCCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGTATCGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGGTATGTCTGCTGTAGATATTGCTAACACCGTATCTGTGTTCAGGTCCCAGAGTGATTCATGA 348 0.4138 METNLRFLAGSFDYSAVISFHFFVEDTPLSVLHNQYPKWPDHGVPNDTLAVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGGMSAVDIANTVSVFRSQSDS* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0928 115 ProSitePatterns Tyrosine specific protein phosphatases active site. 70 80 IPR016130 GO:0016311|GO:0016791
Tpr1g0928 115 Pfam Protein-tyrosine phosphatase 28 112 IPR000242 GO:0004725|GO:0006470
Tpr1g0928 115 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 52 115 IPR000387 GO:0016311|GO:0016791
Tpr1g0928 115 ProSiteProfiles PTP type protein phosphatase domain profile. 22 115 IPR000242 GO:0004725|GO:0006470
Tpr1g0928 115 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 24 112 - -
Tpr1g0928 115 SMART ptp_7 30 114 IPR003595 -
Tpr1g0928 115 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 24 112 - -
Tpr1g0928 115 PRINTS Protein tyrosine phosphatase signature 29 46 IPR000242 GO:0004725|GO:0006470
Tpr1g0928 115 PRINTS Protein tyrosine phosphatase signature 67 85 IPR000242 GO:0004725|GO:0006470
Tpr1g0928 115 PRINTS Protein tyrosine phosphatase signature 100 115 IPR000242 GO:0004725|GO:0006470
Tpr1g0928 115 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 25 112 IPR029021 -
Tpr1g0928 115 Gene3D Protein tyrosine phosphatase superfamily 13 114 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0928 Tpr-Chr1 7952749 7957404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0928 25 112 Protein tyrosine phosphatase (PTP) family AT1G71860 79.545 2.04e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0928 - - pvu:PHAVU_007G087900g 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0928 1 7952749 7957404 Tpr1g0928 1 7952749 7957404 ECH