Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0916 ATGGAAAATATCAACCCAACCCCATTGATATACAAAAACCCAATTAGAAGAACCTCAAGAAGATCAACAATGTATCTTGGTGTAAGAAAAAGACCATGGGGAAAATATGCAGCTGAAATTAGGAATCCATATACTAAAGAGAGACATTGGTTAGGCACATTTAACACTGCTGAAGAAGCTGCAATAGCATATGATTTTTCATCTATTAATATTTGTGGTATTGATAATGCTAGAACTAATTTTCATTACCCTTTTGTATCTCATTCACAACCTCCTTTGTCATTATTACTTCCTGCACCTCCACAACCTACCCAAGTGTTAGATGCAATCTGTATGCTAGAGATGAATGTTGGTTTTGATGGTGGTGATGATGAATCTCTTGTTATTGCTTCTATCTTGCAAACTTTTTCTAATTCTGGTAGTTGTTCTTTATAG 435 0.3471 MENINPTPLIYKNPIRRTSRRSTMYLGVRKRPWGKYAAEIRNPYTKERHWLGTFNTAEEAAIAYDFSSINICGIDNARTNFHYPFVSHSQPPLSLLLPAPPQPTQVLDAICMLEMNVGFDGGDDESLVIASILQTFSNSGSCSL* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0916 144 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 135 - -
Tpr1g0916 144 SMART rav1_2 24 88 IPR001471 GO:0003700|GO:0006355
Tpr1g0916 144 CDD AP2 25 81 IPR001471 GO:0003700|GO:0006355
Tpr1g0916 144 Pfam AP2 domain 26 65 IPR001471 GO:0003700|GO:0006355
Tpr1g0916 144 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Tpr1g0916 144 SUPERFAMILY DNA-binding domain 24 83 IPR016177 GO:0003677
Tpr1g0916 144 ProSiteProfiles AP2/ERF domain profile. 24 82 IPR001471 GO:0003700|GO:0006355
Tpr1g0916 144 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Tpr1g0916 144 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Tpr1g0916 144 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0916 Tpr-Chr1 7804014 7804448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0916 25 114 AP2-EREBP Transcription Factor Family AT1G12890 53.191 1.83e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g0916 AP2 1.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0916 - - gmx:100816937 206.838