Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0911 ATGGCTTCTTCTCAGTCCCAGCATCGCTGTGTCTTTGTTGGGAATATACCGTATGATGCAACAGAAGAACAGCTTATTGAAATTTGCCAAGAGGTTGGTCCTGTAGTTTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAACCAAAAGGTTATGGGTTCTGTGAGTATAAGGATGAAGAAACGGCTTTAAGTGCTCGTAGGAATCTTCAGGGCTATGAAATTAATGGGCGTCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGGACTGATAGAAATAAAGATCAGGGTCGCGGGGGACCAGGAATGACACCAAATGTTGACCCTCAGAAACAGGTAGCCATCCCGGCTGTCCAAGGGGATTCTGCTCAAGCAGCTCAACATCAACCTATTGGTCTTCATATTGCCATAACAGCTGCAGCTGTCATGACTGCAGCTCTAGGCGGCGCTCAGACTAGTATCCAGTCAAATCAAAATGGTTTGCAGAATCAGTCAGCATTGGCAAATGATCCTTTAACTTTGCATCTGGCCAAAATGTCCAGGAGTCAGCTGACTGAGATAATCTCTGAGCTTAAGGGAATGGCTACACACAACAAGGAGATGTCTCGGCAGCTGTTGCTTTCAAGGCCACAGTTGCCTAAGGCTCTTTTTCAGGCTCAAATAATGCTAGGGATGGTCACCCCTCAAATGTTACAAATGCCGAACCTTAGGCAAGTTTCAGATCAAGCCTCGCAGTCTTTAATGAACGAAGGCCTCCTTGGCCAGGCTCAGCAAACATTGGTTCAAACTGTGGCTGCTCTACCTCCTTATGGACAGAGCAAATTGCAGTCTGGCTTGACACCTTACATTCAAGAAGGCCAAGTCAGCACTCTACCTCATAACCCCTTGGCTCCTAATCATAATAACCCTTTGGCTCCTAATCAATTAACCGCAAATTCAAAGCCTCCAATGCAGCCTCGAGCTCCCCTTCAACATCACCCAAGCAACCATTTTGTACAGCTCGGAACAGGACAGTCTAATTTAATGCATCCTTCTGTACGTCCCCCACCTTTGGGCAGTTTGTCTGTTAGGCCTCCAATTCAACCAGTAAATTCAACAGCTTTGAACCAGCAAACACATGCCTCGTTCCTACAGCATCCAGTACATGTTGGAAACTCAACTGTCTCACATAATATTCAAATGGTTCGTCCAAATGCCAGCTTTCAGGCAGGCCCCTCCATGTCATCTGGTATTTCTGGTAGTAGTAAGTATTTAAACATGTCTTCAGGAGTAGAGAATACAGGCATGATTAGGGATATTCCAGAATCTTTTACTCGACCATCGAAGCTCACTAAATTGAATGATGGAAGGGGGGGATCCTCTCTCCCTGCTGAGACTTCAATCATGCCTGTCTCCAATGGATCATCCCATATGCTTGGAACTAGTTCAATACCTGTACCTGTAGTTCCTAAAGCAGAAGTGCGGCATTCTGATCAACAATCTTCACAGCCGCAGCTTCCAACTGATGTTGAGTCTGCTTTATTGCAACAAGTGTTGAATCTAACACCAGAACAGTTGAGTTCCCTGCCACCAGATCAGCAACAACAGGTCATTCAGCTCCAACAAGCTCTTAAGCGAGATCAGATGCAGCACTCATAA 1641 0.4516 MASSQSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNKDQGRGGPGMTPNVDPQKQVAIPAVQGDSAQAAQHQPIGLHIAITAAAVMTAALGGAQTSIQSNQNGLQNQSALANDPLTLHLAKMSRSQLTEIISELKGMATHNKEMSRQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLRQVSDQASQSLMNEGLLGQAQQTLVQTVAALPPYGQSKLQSGLTPYIQEGQVSTLPHNPLAPNHNNPLAPNQLTANSKPPMQPRAPLQHHPSNHFVQLGTGQSNLMHPSVRPPPLGSLSVRPPIQPVNSTALNQQTHASFLQHPVHVGNSTVSHNIQMVRPNASFQAGPSMSSGISGSSKYLNMSSGVENTGMIRDIPESFTRPSKLTKLNDGRGGSSLPAETSIMPVSNGSSHMLGTSSIPVPVVPKAEVRHSDQQSSQPQLPTDVESALLQQVLNLTPEQLSSLPPDQQQQVIQLQQALKRDQMQHS* 547
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0911 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Tpr1g0911 546 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Tpr1g0911 546 Gene3D - 502 542 IPR038192 -
Tpr1g0911 546 MobiDBLite consensus disorder prediction 81 96 - -
Tpr1g0911 546 Pfam Hinge domain of cleavage stimulation factor subunit 2 164 233 IPR025742 -
Tpr1g0911 546 MobiDBLite consensus disorder prediction 81 108 - -
Tpr1g0911 546 SMART rrm1_1 10 83 IPR000504 GO:0003723
Tpr1g0911 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Tpr1g0911 546 Gene3D - 1 113 IPR012677 -
Tpr1g0911 546 Pfam Transcription termination and cleavage factor C-terminal 507 540 IPR026896 GO:0031124
Tpr1g0911 546 Gene3D - 161 235 - -
Tpr1g0911 546 CDD RRM_CSTF2_CSTF2T 11 85 - -
Tpr1g0911 546 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 541 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr1g0911 Tpr-Chr1 7764949 7770470 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0911 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.68e-07 51.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0911 K14407 - gmx:100794399 718.383