Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0901 ATGGCAGCTATGATTTCTTCAACTATGGCTCAGTCTGGAACTTTTGTAGCTCCGGCGACAGCAGTATTGACCACTGGAAGCCAATTTGTGAATGCATCACTTTATGTGGGTGATCTGGAAGGGAGTGTGACTGAGGGACAACTTTTTGATCTGTTCAGCCAAGTTGCTCAGGTTGTCTCAGTTAGGGTTTGTAGGGATCAGACCAGACCATCGTCTCTCGGTTACGCATATGTCAACTTCAAAAATGCTCAAGATGCGGCCAGTGCGAAGGAACTTCTGAACTTCACTCCTCTGAATGGAAAACCCATTCGTATTATGTTTTCTCAACGAGATCCAAGTGTTCGGAAAAGTGGATCTGGCAATGTGTTCATTAAGAACCTGGACAAATTGATTGATCACAGGACACTGCACACCATTTTTGCTGTCTTTGGCTCTATACTTTCTTGTAAAGTGGCTCTTGACGGCAATGGTCAATCAAAAGGGTATGGTTTCGTTCAATTCGAAAATGAACAATCTGCCGAGAACGCCATCAAAGAGTTGAATGGCATGTTGCTAAATGATAAACAAGTATATGTTGGATTTTTCATTTCCTACCAGGAAAGGGCTAGGCTCAATCAATCACCCAAATTTACTAATGTGTATATTAAAAATCTTTCTGAAACACTAGTAAGTGATGAAGACTTGAAGAAGCTATTTAGCCCTTTTGGCACAATAACCAGTGCAAGAGTCATGAAAGATACAAATGGCAAATCCAGATGCTTTGGATTTGTAAATTTTCAGAGTCCAGATTCTGCTGCTGCTGCAGTTGAGAACTTAAACAGAACTACTATGAATGACAAAGTTTTATATGTGGGTCTAGCTCAAAGCAAAGAAGAAAGAGAGCGTGAGCTGAAGGCTAAACTAGAGCAGGAAAGAATTACAAGACATGAGAAATTACAGAGGTCTAATCTGTACTTTAAAAATCTCGAAGATGGTTTTTGTGAGGAAAAGTTGAAGGAGCTATTTTGTAAGTTTGGAACTATAACGTCTTGCAAGGTGATGTTGGATTCTCGTGGTCATAGTACGGGTTCTGGTTTCGTGGCATTTTCAACTCCAGAGGAAGCTGATAAAGCGATGAATGAAATGAATGGTAAGTTCGTTGGAAGAAAGCCTTTGTTTGTTTCTGTGGCTCAGCGCAAAGAAGAGAGGAAGGCCCAGTTGCAGGCTCATTTTGCTGAAATTGCTGCCCCTGGTGGATTCGCACCGCCAGCTGCAGGAATTCATGTATACTATCCAGAGGCATCAAGACTTGCCTCTCAACAGGGTCAAGGCACATATGACTTCATACCATCTCAGCCTGCTGGATTTGCTGGTGGAATGCGGCCTGGCGTTGCTGGGAATTTTGTTATGCCGTATCAACTGCAAAAACAGGGTCAAAATGGGCAAAGGATAGGTGCTCGACGAAATGGAAATCTCAGACACGGGCACCGGAACCAAATGATACATCGTAACTCCAACCAAGGTTTTAGATACACGGCTAACAACCGAAATGGCATGGATTCGTCTGGAGTTTCTCATGGTCTAGCTGGTCCAATGTTGCCTATGACATTTGATGGTTCTGGAGTTACTGCACCTATTGATAATCAGCATCCCGGGTCTACATCACTTGCTTCAGCTTTAGCTGCTGCAACTCCAGAAAATCAGCGCATGATGTTGGGCGAACAACTTTATCCCCTTGTGGACCGGCTTACCACAAAGGAACTTGCAACAAAGGTGATAGGGATGTTGCTTGAAATGGACCTAGCAGAAGTAATTAATCTCATTGAATGTCCGGATGACCTCAAAATAAAGGTTTCTGAGGCATTGCAGGTCCTTCATGACGCTGCATCGGAATCTAAAGCTGGTGATCAACTTGGTTCGTTGTCATTGAACGAATGA 1917 0.4309 MAAMISSTMAQSGTFVAPATAVLTTGSQFVNASLYVGDLEGSVTEGQLFDLFSQVAQVVSVRVCRDQTRPSSLGYAYVNFKNAQDAASAKELLNFTPLNGKPIRIMFSQRDPSVRKSGSGNVFIKNLDKLIDHRTLHTIFAVFGSILSCKVALDGNGQSKGYGFVQFENEQSAENAIKELNGMLLNDKQVYVGFFISYQERARLNQSPKFTNVYIKNLSETLVSDEDLKKLFSPFGTITSARVMKDTNGKSRCFGFVNFQSPDSAAAAVENLNRTTMNDKVLYVGLAQSKEERERELKAKLEQERITRHEKLQRSNLYFKNLEDGFCEEKLKELFCKFGTITSCKVMLDSRGHSTGSGFVAFSTPEEADKAMNEMNGKFVGRKPLFVSVAQRKEERKAQLQAHFAEIAAPGGFAPPAAGIHVYYPEASRLASQQGQGTYDFIPSQPAGFAGGMRPGVAGNFVMPYQLQKQGQNGQRIGARRNGNLRHGHRNQMIHRNSNQGFRYTANNRNGMDSSGVSHGLAGPMLPMTFDGSGVTAPIDNQHPGSTSLASALAAATPENQRMMLGEQLYPLVDRLTTKELATKVIGMLLEMDLAEVINLIECPDDLKIKVSEALQVLHDAASESKAGDQLGSLSLNE* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0901 638 Gene3D - 27 120 IPR012677 -
Tpr1g0901 638 Coils Coil 287 307 - -
Tpr1g0901 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 545 623 IPR002004 GO:0003723
Tpr1g0901 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Tpr1g0901 638 CDD RRM2_I_PABPs 118 194 IPR045305 -
Tpr1g0901 638 CDD RRM3_I_PABPs 210 290 - -
Tpr1g0901 638 SUPERFAMILY PABC (PABP) domain 496 630 IPR036053 GO:0003723
Tpr1g0901 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Tpr1g0901 638 CDD RRM1_I_PABPs 33 112 - -
Tpr1g0901 638 Gene3D - 121 205 IPR012677 -
Tpr1g0901 638 Pfam Poly-adenylate binding protein, unique domain 553 618 IPR002004 GO:0003723
Tpr1g0901 638 PANTHER RNA BINDING PROTEIN 21 625 - -
Tpr1g0901 638 SMART rrm1_1 316 388 IPR000504 GO:0003723
Tpr1g0901 638 SMART rrm1_1 33 106 IPR000504 GO:0003723
Tpr1g0901 638 SMART rrm1_1 212 285 IPR000504 GO:0003723
Tpr1g0901 638 SMART rrm1_1 121 193 IPR000504 GO:0003723
Tpr1g0901 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Tpr1g0901 638 SMART rrm2_1 33 106 IPR003954 GO:0003676
Tpr1g0901 638 SMART rrm2_1 121 193 IPR003954 GO:0003676
Tpr1g0901 638 SMART rrm2_1 212 285 IPR003954 GO:0003676
Tpr1g0901 638 SMART rrm2_1 316 387 IPR003954 GO:0003676
Tpr1g0901 638 Gene3D - 311 410 IPR012677 -
Tpr1g0901 638 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 32 618 IPR006515 GO:0003723
Tpr1g0901 638 SUPERFAMILY RNA-binding domain, RBD 210 396 IPR035979 GO:0003676
Tpr1g0901 638 SMART poly_2 557 621 IPR002004 GO:0003723
Tpr1g0901 638 SUPERFAMILY RNA-binding domain, RBD 32 197 IPR035979 GO:0003676
Tpr1g0901 638 PANTHER POLYADENYLATE-BINDING PROTEIN 21 625 - -
Tpr1g0901 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 384 IPR000504 GO:0003723
Tpr1g0901 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Tpr1g0901 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 282 IPR000504 GO:0003723
Tpr1g0901 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Tpr1g0901 638 Gene3D - 206 310 IPR012677 -
Tpr1g0901 638 Gene3D - 543 623 - -
Tpr1g0901 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0901 Tpr-Chr1 7660412 7664658 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0901 1 618 Eukaryotic Initiation Factors Gene Family AT1G22760 53.052 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0901 K13126 - gmx:100783163 881.322