Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0893 ATGTGCTTTAACTATACTAGTACTCTTTTATCACCTTCACTCTTCACCTTCATCTTCAAAACTAATCTCAAACTTCAAGTAAAGTCACCATTTTCAGAAACACAAATGGAAAATATTAGTGTTAGTGTTACCTCTTTGTTCTTTTTCTTCATCTTTTTTAGCTTAACAAAGATACAAGAAGTAACATCTCTTTCACCTGATGGACAAGCACTTCTTTCTCTTGCAACATCATCACCTTCTCTTCTCTCTTCATGGAACCCTTCAACCTCAACACCTTGTTCATGGAAAGGTATAACTTGTTCACCACAATCTAGAGTAATTTCCCTTTCTATCCCTGATACTTTTCTCAACCTTACATCTTTACCACCTCAACTATCATCTTTAACAATGCTTCAACTTCTTAACCTCTCTTCAACCAATCTTTCTGGTTCAATCCCACCTTCTTTTGGTCAACTCTCTCATCTTCAACTCCTTGATCTTTCTTCAAACTCTTTAACTGGTTCCATTCCTAATGAACTAGGAAACCTTTCATCTCTTCAGTTTCTTTTCTTGAACTCAAACAGATTAACAGGAACCATTCCTCAACAGCTTTCTAATCTTACTTCACTTGAAGTTCTTTGTCTTCAAGATAATCTTTTCAATGGCTCAATTTCTTCACAGTTAGGCTCTTTGAAATCTCTTCAGCAGTTTAGGATTGGTGGTAACCCTTTTCTCACAGGAGAACTACCTTCACAGTTAGGACTATTAACCAACCTCACCACATTTGGTGCAGCTGCAACTTCTCTTTCAGGTTCTATTCCTTCAACATTTGGAAACTTGGTCAATCTACAAACTCTAGCACTTTATGATACTGAAATTTCTGGATCAATACCATCAGAACTTGGTTTATGTTCTGAGTTGAGAAATCTTTATTTACATATGAACAATCTCACTGGCTCTATTCCTCATGAATTAGGTAAGTTGCAAAAACTTACTAGTTTGCTTCTTTGGGGGAACTCATTATCTGGTAAAATCCCTTCTGAAATTTCAAACTGTTCATCATTAGTTATATTTGATGTATCTTCTAATGATCTATCTGGTGAAATACCTGGTGATTTTGGGAAGTTAGTTGTTCTTGAACAGCTTCATTTGTCCGATAATTCGCTCACCGGCAAAATACCGTGGCAGCTGAGTAACTGCACTAGTCTTGCAACCGTTCAGCTTGACAAGAATCAGTTATCAGGTACTATTCCTTATCAGATTGGTAAATTGAAGGTTCTGCAGAGTTTTTTCTTGTGGGGGAATTTGGTTTCTGGAACTATACCTTCTTCATTTGGAAACTGTACTGAACTTTATGCACTTGATCTTTCAAGGAATAAGTTAACAGGTTCTATTCCAGAAGAGATTTTCAGTTTGCAGAAGCTGAGTAAGCTTCTGCTTCTTGGAAATTCATTAACAGGAAAGTTGCCAGCAAGTGTTGCAAATTGTCAATCTTTGGTTAGGTTGAGAGTTGGAGAGAATCAGCTTTCAGGAGAGATTCCTAAAGAGATAGGAAAGTTGCAGAATCTTGTGTTTCTTGATTTGTACATGAATCATTTCTCCGGAAGATTACCGGTTGAGATTGCGAATATTACAGTTCTTGAACTCTTAGATGTGCATAACAATTACCTCGGAGGTGAAATTCCGTCGCTGATTGGAGAACTTGAAAATTTGGAGCAGCTTGATCTAAGTAGAAACAGTTTGACAGGTGAAATCCCTTGGAGTTTCGGAAACTTGAGTTATTTGAATAAGCTTATTCTCAACAATAATTTGTTAACAGGTTCAATACCTAAATCTGTCAGAAATTTGCAGAAGTTAACTCTATTGGATTTGAGTTATAACAGCTTATCTGGTAGCATACCTTCAGAGATTGGTCATGTTACAAGCTTAACCATAAGTTTGGATTTGAGCTCAAATTCATTCACAGGTGAAATACCAGATTCTATGTCTGCTTTGACACAGTTGCAATCACTTGATCTTTCAAGGAACATGATTCATGGAGGAATCAAGGTTCTTGGTTCTTTAACTAGTCTCACTTATCTCAATATATCCTACAACAACTTCTCAGGTCCTATTCCAGTAACTCCGTTCTTCAAAACTATAACTTCCAGTTCATATCTTCAGAACCGGAATCTGTGTCAGTCGATTGACGGTACTACATGTTCTTCAAGTCTGTTTCAAAAGAGTGGTTTAAAATCTGCGAAAACTGTAGCTATGATCACTATTATTCTAGCTTCGGTTACCATAATTGTCATTGCGTCTTGGATTCTGGTAACTCGTAGCAATCATCAATACAATGTTGAGAAAGCTTTGAGGATACCAGGTTCCGCTTCAGGAGCCGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGATAATATCTTGGATTGCCTGAAAGACGAAAATGTGATTGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAAATGCCGCATGGAGAGGTTATAGCAGTGAAGAAGCTTTGGAAAACAAACAAAGGAGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATTCTCGGCTACATTCGACATAGAAACATTGTGAGGCTCATAGGTTATTGTTCTAATGGCAGTGTTAAGCTTCTTCTCTATAACTACATCCAAAATGGTAATCTAAGACAGCTTTTGGAAGGGAATAGGAACTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGTTCAGCTCAGGGTCTATCTTACCTTCATCATGATTGTGTCCCATCAATTCTTCACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCCAAATATGAGGCTTATATTGCAGATTTCGGTCTAGCAAAGCTAATGAATTCGCCAAATTATCATCATGCAATGTCCAGGGTTGCCGGTTCCTACGGCTATATTGCCCCAGAGTATGGCTACACCATGAACATAACAGAGAAGAGTGATGTATACAGTTATGGAGTGGTTTTGCTAGAGATACTAAGCGGAAGAAGTGCCGTTGAATCTCAACATGTTGGAGACGGACAACACATAGTTGAATGGGTGAAGAAGAAAATGGCAAGCTTTGAACCAGCTGTATCAATACTAGATACAAAGCTTCAAAGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAATTCTTCGCCGGTTGAACGTCCAACTATGAAGGAAGTTGTTGCATTACTGATGGAAGTGAAGTGTCAGCCTCATGAGGAGATGGGGAAAACCTCTCAACCTTTAATCAAACAGTCATCAACTCAATGCTGA 3336 0.3792 MCFNYTSTLLSPSLFTFIFKTNLKLQVKSPFSETQMENISVSVTSLFFFFIFFSLTKIQEVTSLSPDGQALLSLATSSPSLLSSWNPSTSTPCSWKGITCSPQSRVISLSIPDTFLNLTSLPPQLSSLTMLQLLNLSSTNLSGSIPPSFGQLSHLQLLDLSSNSLTGSIPNELGNLSSLQFLFLNSNRLTGTIPQQLSNLTSLEVLCLQDNLFNGSISSQLGSLKSLQQFRIGGNPFLTGELPSQLGLLTNLTTFGAAATSLSGSIPSTFGNLVNLQTLALYDTEISGSIPSELGLCSELRNLYLHMNNLTGSIPHELGKLQKLTSLLLWGNSLSGKIPSEISNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLATVQLDKNQLSGTIPYQIGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLTGSIPEEIFSLQKLSKLLLLGNSLTGKLPASVANCQSLVRLRVGENQLSGEIPKEIGKLQNLVFLDLYMNHFSGRLPVEIANITVLELLDVHNNYLGGEIPSLIGELENLEQLDLSRNSLTGEIPWSFGNLSYLNKLILNNNLLTGSIPKSVRNLQKLTLLDLSYNSLSGSIPSEIGHVTSLTISLDLSSNSFTGEIPDSMSALTQLQSLDLSRNMIHGGIKVLGSLTSLTYLNISYNNFSGPIPVTPFFKTITSSSYLQNRNLCQSIDGTTCSSSLFQKSGLKSAKTVAMITIILASVTIIVIASWILVTRSNHQYNVEKALRIPGSASGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPHGEVIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNYIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLSYLHHDCVPSILHRDVKCNNILLDSKYEAYIADFGLAKLMNSPNYHHAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESQHVGDGQHIVEWVKKKMASFEPAVSILDTKLQSLPDQMVQEMLQTLGIAMFCVNSSPVERPTMKEVVALLMEVKCQPHEEMGKTSQPLIKQSSTQC* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0893 1111 PANTHER UNNAMED PRODUCT 35 1107 - -
Tpr1g0893 1111 SMART serkin_6 812 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0893 1111 Gene3D Ribonuclease Inhibitor 315 411 IPR032675 -
Tpr1g0893 1111 SUPERFAMILY L domain-like 402 719 - -
Tpr1g0893 1111 Pfam Leucine Rich Repeat 563 585 IPR001611 GO:0005515
Tpr1g0893 1111 PRINTS Leucine-rich repeat signature 155 168 - -
Tpr1g0893 1111 PRINTS Leucine-rich repeat signature 561 574 - -
Tpr1g0893 1111 Pfam Protein kinase domain 814 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0893 1111 SUPERFAMILY RNI-like 134 512 - -
Tpr1g0893 1111 ProSiteProfiles Protein kinase domain profile. 812 1096 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0893 1111 ProSitePatterns Protein kinases ATP-binding region signature. 818 841 IPR017441 GO:0005524
Tpr1g0893 1111 SMART LRR_typ_2 658 685 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 152 175 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 561 584 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 128 151 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 609 633 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 441 465 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 273 297 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 369 393 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 200 224 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 321 345 IPR003591 -
Tpr1g0893 1111 SMART LRR_typ_2 176 199 IPR003591 -
Tpr1g0893 1111 Pfam Leucine rich repeat N-terminal domain 65 101 IPR013210 -
Tpr1g0893 1111 Gene3D Transferase(Phosphotransferase) domain 1 890 1107 - -
Tpr1g0893 1111 SUPERFAMILY Protein kinase-like (PK-like) 797 1086 IPR011009 -
Tpr1g0893 1111 Gene3D Phosphorylase Kinase; domain 1 792 889 - -
Tpr1g0893 1111 Gene3D Ribonuclease Inhibitor 603 729 IPR032675 -
Tpr1g0893 1111 Gene3D Ribonuclease Inhibitor 412 504 IPR032675 -
Tpr1g0893 1111 Gene3D Ribonuclease Inhibitor 505 602 IPR032675 -
Tpr1g0893 1111 Gene3D Ribonuclease Inhibitor 67 217 IPR032675 -
Tpr1g0893 1111 PANTHER - 35 1107 - -
Tpr1g0893 1111 Pfam Leucine rich repeat 131 189 IPR001611 GO:0005515
Tpr1g0893 1111 Pfam Leucine rich repeat 639 694 IPR001611 GO:0005515
Tpr1g0893 1111 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Tpr1g0893 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Tpr1g0893 1111 Gene3D Ribonuclease Inhibitor 218 314 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0893 Tpr-Chr1 7607539 7611857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0893 63 1105 Receptor kinase-like Gene Family AT5G56040 45.231 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tpr1g0893 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0893 - - ccaj:109812175 1746.1