Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0889 ATGACGGAATCGGAGATTGGGACACCGACGGCTGCGTCGGTGCCAGCAACCCCAGATACTCCGGGAGGGCCACTATTCTCATCAGTGAGAATTGATTCGCTTGAGCGTGAGTCATTTGCAATGGGGAGGTGCAACATGTGTTTGCCGGGTGGTAAAAGCAATGGTTGCATTAACATGGCTTCTAGTGTTGGAATTCCGAGTGTGTCTCTCGCTCAGAAGATTGGAGCAGAATTTGTAGGAACATTCATACTAATATATGCAGCAACAGCAGGACCAATAGTGAACAACAAATACAATGGAGTAGAAACACTTATGGGAAATGCAGCTTGTGCTGGATTAACAGTCATGTTCATTATTCTCTCAATTGGTCATATCTCAGGTGCACATCTCAATCCATCACTCACCATCGCGTTCGCTGCGTTTCGCCATTTTCCTTGGGCACATGTTCCTGCCTACATTGCGGCACAAACCTCCGCTTCGATCTGCGCTTGTTATGCTCTCAAAGTTGTTTACCATCCATTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTGACGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTTACTGCTGTTGCTACTGATTCCCGCGCGGTTGGTGAATTGGCTGGTATAGCTGTTGGGGCTACAGTTTTGCTCAACATTCTTATCTCAGGGCCAACAAGTGGTGGTTCGATGAATCCAGTGCGCACCTTAGGCCCAGCCGTGGCAGCAGGAAATTACAAGCATATCTGGATATATTTGGTGGCGCCGACGCTTGGTGCTCTTGCTGGTTCCGGAGTTTATACACTTATCAAGCTGCGTGACAATGAAGCTGAACCGCCACGATCGGTTAGGAGCTTCCGTCGCTAG 897 0.4794 MTESEIGTPTAASVPATPDTPGGPLFSSVRIDSLERESFAMGRCNMCLPGGKSNGCINMASSVGIPSVSLAQKIGAEFVGTFILIYAATAGPIVNNKYNGVETLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQTSASICACYALKVVYHPFLSGGVTVPTVDVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGSGVYTLIKLRDNEAEPPRSVRSFRR* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0889 298 PANTHER AQUAPORIN NIP5-1-RELATED 10 295 - -
Tpr1g0889 298 PANTHER AQUAPORIN NIP2-1 10 295 IPR034294 -
Tpr1g0889 298 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Tpr1g0889 298 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 Pfam Major intrinsic protein 67 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tpr1g0889 298 SUPERFAMILY Aquaporin-like 68 288 IPR023271 -
Tpr1g0889 298 Gene3D Glycerol uptake facilitator protein. 52 292 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0889 Tpr-Chr1 7540080 7547152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0889 25 298 Major Intrinsic Protein MIP AT4G10380 70.357 2.98e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0889 K09874 - gmx:100804356 512.301