Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0884 ATGTCTTCCAACGAAGTTCAAATACCAAAACTTTATGATGATATCATGTTTATCAAGGGTGGAAATGCTGCTGGTGAGTATCAGTTGAGGGTTTTAAGAAAGTGGTCTGTTTTTAACAGTGTTTTTCCTGGAAATGTTGAATCGGTTGATATGGTGATGATCGACATGAATGGTCATAAAATCCAAGCCACTATTCCTAATCTTTTGTTGTGTCTTTTCGATAACCTAATAGATGAGGGTAACGTTTATGTTTTGTCTAATTTATCTGTGACTTACAACTTGCATGAGATTCTAGGAAGTTATAATAGGTATATGCTTGTGTTTAATGTTAACACTAAGGTGAATCTTTCTTCGAGTTCTTCTATTGCACATTATGGGATGTCCCTCATCGGATCCGATAATGTTCTCCAGCTTTCCGAAAGATTCAAGTATTTAGTTGATGTAATTGGTGTGATAACTTTCATCAGACACAACAAAAACTATTTCGATGACGGCACCATATCCACGACAGTTTCTTTCAAGCTTACGGATCATAGAAATTCGTATGATTGTGAGCTGTGTGGTGACTATGTTGATCTTTTTCGTGTATTGATGGAGAACCAACCCCTAGGGTTGCCCATTGTTGTCCTCCAGTTTGCTAAAATAACTATGCAACAAGGTTCCATTGTTGTTCAAAGTGTTGACCATGTCACAAGGCTCTATGTTAATCCAGTCATTCCTGAATCAATACAATTCAAGACAGGATTGATTCTGGCACTGAACCAGACCAGAAGACTTCTTGGTAATTGTCCGACGGATAAATCGGTGGGCTTTAGGTTTGATGTCAGTTACCAATTCAAGACAATTTCTGAGCTAATGGATGACCCCCAAACTGGTATTTTTATTGTCAATGCTCGCATAGTTGATATGATTGAACTGAACACGTGGTGGTATCCGGTGTGTCGTTGTGATATCATTGTTGAGAGCTACCTCGGTGCCTATTTTTGCGAGAACTGCCACGCAACAGAATTTTCTGCTGTTCCAAAGTATAGAGTTAAAATGGTGTTAGAAGATGAAACTGGTGCCTGTTTTATTGAGGCCTATGATCATGTTATGCTTCCTATTTCATTGGTTGACCCTAATAATCCGATATTGCCTGAGGCTTTTTTTCCCCGTGCATTTGACTCGGTAATGGGCAAAAGTATAGTTTTGATCCTGCACAAGACAGTTCACATTGATAAATTTCTTGATCCAGTATATGAGGTTCGTTGTGTGTCCGATGATCCTCAGGTGATGAATTTTTATGCTAGCATTGGTCTTTGCAGGATTCCTTCAAAGATTGTTCCAAATTTGATTGATCCAGAATGCAATCTGATGAAAAAAAAGGTGTATCGTCCTCCTGTTACCTCTACCGAACGTTTGCTTGACGAGTATCTAGGACCGGTTTATCGCAGGAATCCACCATGCGACGATGCAGAGAGTTCTTCTGCTGCTGCTGGGAAATCTAGATTGGTTAGGCAATGTAGTAGTAGTTTATTTGTTCTGGATAGTTTGAATGAATGTGAAGGTTTTCACATTACAATGGAGTATTCCATTGATAATATATCCAGGTTTAGTGTTTGTTCTTTAATGTTTAGGAATGATGTTGTAATTGTGTATTGA 1641 0.3857 MSSNEVQIPKLYDDIMFIKGGNAAGEYQLRVLRKWSVFNSVFPGNVESVDMVMIDMNGHKIQATIPNLLLCLFDNLIDEGNVYVLSNLSVTYNLHEILGSYNRYMLVFNVNTKVNLSSSSSIAHYGMSLIGSDNVLQLSERFKYLVDVIGVITFIRHNKNYFDDGTISTTVSFKLTDHRNSYDCELCGDYVDLFRVLMENQPLGLPIVVLQFAKITMQQGSIVVQSVDHVTRLYVNPVIPESIQFKTGLILALNQTRRLLGNCPTDKSVGFRFDVSYQFKTISELMDDPQTGIFIVNARIVDMIELNTWWYPVCRCDIIVESYLGAYFCENCHATEFSAVPKYRVKMVLEDETGACFIEAYDHVMLPISLVDPNNPILPEAFFPRAFDSVMGKSIVLILHKTVHIDKFLDPVYEVRCVSDDPQVMNFYASIGLCRIPSKIVPNLIDPECNLMKKKVYRPPVTSTERLLDEYLGPVYRRNPPCDDAESSSAAAGKSRLVRQCSSSLFVLDSLNECEGFHITMEYSIDNISRFSVCSLMFRNDVVIVY* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0884 546 Gene3D - 14 116 IPR012340 -
Tpr1g0884 546 SUPERFAMILY Nucleic acid-binding proteins 277 399 IPR012340 -
Tpr1g0884 546 SUPERFAMILY Nucleic acid-binding proteins 143 246 IPR012340 -
Tpr1g0884 546 CDD RPA1_DBD_A_like 28 114 - -
Tpr1g0884 546 CDD RPA1_DBD_B_like 147 241 - -
Tpr1g0884 546 SUPERFAMILY Nucleic acid-binding proteins 30 120 IPR012340 -
Tpr1g0884 546 Gene3D - 121 250 IPR012340 -
Tpr1g0884 546 Gene3D - 270 405 IPR012340 -
Tpr1g0884 546 Pfam Domain of unknown function DUF223 51 120 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0884 Tpr-Chr1 7510813 7513396 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0884 53 362 Core DNA Replication Machinery Family AT5G08020 21.930 1.93e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0884 - - mtr:MTR_8g062060 238.039