Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0880 ATGATCTCCATAGCTCCCCATCCAAATTCAATTGATGCATTGAAGTTTAAAATGTCTGCTCAAAAGGATCCTCATAAGTTCTTCATGTCTATCAGTCAAGAAGAGAATAATCCATTTGACTATTTTCGTGCTCTATATGAAGGTTGTATTGCTGGAGGTGTTGCTGGTGTTGCTGTAGAAGCAGTTTTATACCCCATTGATACCATCAAAACTCGACTACAGGTTGCTCGTGGCGGAGTAAATATTGTTTTCAAGGGTTTGTATTCTGGATTGGCTGGAAATCTTGCTGGTGTCTTACCAGCTTCTGCAATTTTTATTGGTGTGTATGAACCAGCAAAGCAGAAATTGCTAGAGATCTTCCCTGAAAATCTAAGCGCTCTGGCTCACATTGCTGCAGGTACTATTGGAGGAGCCGCTTCTTCTCTTGTTCGTGTTCCAACTGAGGTTGTTAAGCAAAGGATACAGACCGGTCAATTCAAATCAACCCCAGCTGCTGTCCGTCTTATCATTGCTAATGAGGGTTTTAAAGGTCTTTATGCGGGATATGGATCTTTCTTATTGCGAGATTTACCATTTGATGCTTTAGAATTATGCATCTACGAACAGCTCCGTATCGGGTATAAACTAGCGGCAAAAAGAGATCTAAATGATCCAGAGAATGCTATGCTTGGGGCTTTTGCTGGCGCCATAACTGGAGCAGTTACAACTCCACTTGATGTAGTGAAAACCAGATTGATGGTTCAGGGAACTCAAAAATATTACAACGGCATTTGTGATTGTGTTAGGACAATAGTTAAAGAAGAAGGAGCTCATGCTCTTTTTAAGGGTATTGGACCAAGAGTTTTATGGATAGGAATAGGTGGTTCAATATTTTTTGGTGTTCTTGAGAAGACAAAGAAAATTCTTGCTCAGAAGCACTCCCAAACTAATGCACAGAAGTGA 942 0.4055 MISIAPHPNSIDALKFKMSAQKDPHKFFMSISQEENNPFDYFRALYEGCIAGGVAGVAVEAVLYPIDTIKTRLQVARGGVNIVFKGLYSGLAGNLAGVLPASAIFIGVYEPAKQKLLEIFPENLSALAHIAAGTIGGAASSLVRVPTEVVKQRIQTGQFKSTPAAVRLIIANEGFKGLYAGYGSFLLRDLPFDALELCIYEQLRIGYKLAAKRDLNDPENAMLGAFAGAITGAVTTPLDVVKTRLMVQGTQKYYNGICDCVRTIVKEEGAHALFKGIGPRVLWIGIGGSIFFGVLEKTKKILAQKHSQTNAQK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0880 313 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 12 310 - -
Tpr1g0880 313 Gene3D Mitochondrial carrier domain 48 313 IPR023395 -
Tpr1g0880 313 SUPERFAMILY Mitochondrial carrier 46 296 IPR023395 -
Tpr1g0880 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Tpr1g0880 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Tpr1g0880 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 115 IPR018108 -
Tpr1g0880 313 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Tpr1g0880 313 Pfam Mitochondrial carrier protein 219 305 IPR018108 -
Tpr1g0880 313 Pfam Mitochondrial carrier protein 46 78 IPR018108 -
Tpr1g0880 313 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 12 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0880 Tpr-Chr1 7475948 7481768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0880 45 310 Chloroplast and Mitochondria Gene Families AT1G07030 30.928 7.95e-32 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0880 K15111 - gmx:100800051 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0880 1 7475948 7481768 Tpr1g0880 1 7475948 7481768 ECH