Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0872 ATGGGCTGTGTTCAAGCCAAACCATTAGAATCTGAAGGTTCTTCAGACTATAGAGGACTAAACAGGTTCAAAATGGAAAATGGGTATGTTCCAAGTTCTGATTTTGTTGCTCATAGAAGATCCACTGGTGGTCAAACTAAAAAACCTCATGTTGAGAACAAGACTAAGGATATTGTTATTGATCATCAGGTTTATCAGAAACAACCCAGAAAGCATAAAGTTGTTGATGGAAAAAGTGTTGGTGGAAAGGGAAAGAGAGATGGTGATTTGAAAGATAGTAAGAAACATTTGAATAATGTTTTTGAAGATGAGATGGTTGATGGTTGGCCTAAATGGTTAGTTGATAATGTTCCTATTCAAGGCTTGGCTGGCTTGGTTCCTAAGAGTGCTGAATCTTACAAAATGATTGACAAGGTAGGACAAGGAACCTACAGCAATGTTTATAAAGCACTAGATCGAGAAACGGGCGATATTGTGGCACTCAAAAAGGTCCGGTTCAATACATCAGAGCCTGAAAGCATTAAATTTATGGCAAGAGAAATTACCATATTACAGAAATTGGATCATCCCAATGTAGTAAAACTTAAAGGGCTTGCCACTTCAAGAATGCAGTATAGTATATATCTAGTTTTTGATTTCATGCCAACTGATTTGTCGAGAATTATTACTCGACCTGACGAAAGACTAACCGAACCACAGGTCAAGTGCTATATGCATCAATTGCTTTCAGGTCTTCAGCATTGCCACGATAGAGGAATTTTGCATCGAGATATAAAGGGATCAAATCTTTTGATTGATAAAAATGGAATGCTTCAGATTGCCGATTTTGGACTTGCCAATTATTATAGTACAAATCAACAACAGCCTCTCACAAACCGGGTTGTGACGTTATGGTACAGAGCTCCTGAGTTGTTGTTAGGTTCCACCGATTATGGAGTTGGTATTGATCTATGGAGTGCTGGATGTCTCCTTGCAGAAATGTTTAGAGGAATGCCAATTATGCCTGGAAGAACAGAGGTTGAGCAACTTCATAGAATTTTCAGGCTATGTGGAACACCGTCACAAGAGTATTGGAAAAAGTTAAAACTTTCTACAACTTTTATACCTCCAAAGTCTTATAGACCAAGTCTGGTAGAAACTTTCAAGGATCTGCCTACATCTTCTTTAGGTCTTTTATGTACTCTTCTTGCTTTGGATCCTTCATTTCGCGGAAGTGCATCTAAAGCTCTTAAAAATCAGTTTTTCCTTACGAGCCCATTGGCTTGTGATCTGTCTGGTCTGCCAACAATCTTCAAAGAAGATGATGAGAACATTCGAGCCAAAGAACAGATCAAGTATATTAACTCCAAAATCAGGCGTTCTCGTACATTTATGGAGCGTCGCAAGAATTTATCATCTAATAAGCCAATAGAACCTACTGTATCATCTAAAGAGGTCTTGAGAAGTAACGCCGAGGCTGAAACTTATGTTCCAAGTCAAGAACCAGGTAGTGCAACAAGTAGTACTTCATCTAGTGTAAACCAAGCTGGAATTGAGGACCACTCACCCCTCTTTATCTCTCCATTTCTTGGTTCTGATCAAAAGTTACCCCACAAAATCCATAATAGGCATGCTAATGTTGGTGAAAAAAACAAGAACCTTCCTCCATTATCCAAGTCAAAACCAAATGTAACCAAGAAAGATGATAACAGATACAGAACAGACCAGATTTTCAGGTCTACTTCCACTAGAGAATTTAGAAAGTTAAAAACAGAAGAAAATTTACCCTTTGATTAG 1776 0.3823 MGCVQAKPLESEGSSDYRGLNRFKMENGYVPSSDFVAHRRSTGGQTKKPHVENKTKDIVIDHQVYQKQPRKHKVVDGKSVGGKGKRDGDLKDSKKHLNNVFEDEMVDGWPKWLVDNVPIQGLAGLVPKSAESYKMIDKVGQGTYSNVYKALDRETGDIVALKKVRFNTSEPESIKFMAREITILQKLDHPNVVKLKGLATSRMQYSIYLVFDFMPTDLSRIITRPDERLTEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANYYSTNQQQPLTNRVVTLWYRAPELLLGSTDYGVGIDLWSAGCLLAEMFRGMPIMPGRTEVEQLHRIFRLCGTPSQEYWKKLKLSTTFIPPKSYRPSLVETFKDLPTSSLGLLCTLLALDPSFRGSASKALKNQFFLTSPLACDLSGLPTIFKEDDENIRAKEQIKYINSKIRRSRTFMERRKNLSSNKPIEPTVSSKEVLRSNAEAETYVPSQEPGSATSSTSSSVNQAGIEDHSPLFISPFLGSDQKLPHKIHNRHANVGEKNKNLPPLSKSKPNVTKKDDNRYRTDQIFRSTSTREFRKLKTEENLPFD* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0872 591 MobiDBLite consensus disorder prediction 537 572 - -
Tpr1g0872 591 PANTHER CYCLIN-DEPENDENT KINASE 1 558 - -
Tpr1g0872 591 Pfam Protein kinase domain 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0872 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Tpr1g0872 591 Gene3D Transferase(Phosphotransferase) domain 1 216 452 - -
Tpr1g0872 591 MobiDBLite consensus disorder prediction 459 508 - -
Tpr1g0872 591 PANTHER CELL DIVISION PROTEIN KINASE 1 558 - -
Tpr1g0872 591 SUPERFAMILY Protein kinase-like (PK-like) 128 419 IPR011009 -
Tpr1g0872 591 MobiDBLite consensus disorder prediction 467 508 - -
Tpr1g0872 591 MobiDBLite consensus disorder prediction 70 91 - -
Tpr1g0872 591 ProSiteProfiles Protein kinase domain profile. 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0872 591 Gene3D Phosphorylase Kinase; domain 1 123 215 - -
Tpr1g0872 591 SMART serkin_6 133 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0872 591 MobiDBLite consensus disorder prediction 555 572 - -
Tpr1g0872 591 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0872 Tpr-Chr1 7412029 7415740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0872 128 450 Core Cell Cycle Gene Families AT5G10270 44.575 1.18e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr1g0872 Pkinase 1.9e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0872 K08819 - gmx:100776854 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0872 1 7412029 7415740 Tpr1g0872 1 7412029 7415740 ECH