Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0869 ATGGATCCTTATTCTGAAGACTTGCCTCATTACATTCATATCAATCAGAATGAATTTTATATGCGAAGGCATAAGAAACAGAAGGAGGAGGATATTGCTATATGTGAATGTAGGTACGATGAAGATGACCCTGACAGTGCCTGTGGAGATGGGTGTCTAAATGTATTAACCAGTACTGAATGCACCCCTGGTCATTGCCCTTGCGATACCCTTTGTAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTATTTAAAACTGAAGGCCGGGGCTGGGGTCTTTTGGCTGATGAGGAAATTAAGGAAGGACAGTTTATCATTGAATACTGCGGAGAAGTAATATCATGCAAAGAAGCCAAACGCAGATCCCATGCTTATGAAATTCAAGGTCTCAAGGATGCATTTATCATTAGTCTTAATGCGTCTGAATCCATTGATGCAAGTAGAAAAGGAAGCATCGCCAGATTTATCAATCATTCCTGTCAACCAAATTGTGAGACAAGAAAATGGAATGTCTTGGGGGAAATAAGAGTTGGAATATTTGCAAAGCATGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCTAAAATGTTCTGGATTCCTTGGAGCAAAGTCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATTGAGAAAATTCCTTTATATGACTCGGCGGAGGATGAACTGACGTCAAATGTTGATGGACAAAGTGAACAATCCATGGCTATTGTACTTAAATCTGAAGAACTATCAGACTCCACTGTTTTAGATATTCAACCACTCAATTCTTCAATTGAGATCAAGGATTTAGGTATTGGAAAAATGAAAACTGAAATAGTAAGCGAGGACATGAAGTTGTACTCCCAAGATACCGAAGAGGACCTTTCACAAAAGAATGCAATGATATCACGCATTCGAAGTAACACTGCAGGAAGAAACTATCGCATTGGACCTAGGTCTGCCAAAAGATCAAAGGCAGGGGGAAGGTTTAAAAAACGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTAGCCTCTTAGCATCAAAGGTAGCACAAGAGGAGATCTTAGATTATGAGAAAAGGAAAGACGATGCCACAGAAGCCCTTGATTCTTTATACAATGAAATACGGCCTGCCATCGAAGAACACGAGAGGGACACACAAGACAGCGTATCTACAACAGTAGCAGAGAAGTGGATACAAGCTTGCTGCCTAAAACTGAAGGCGGAGTTTGATCTTTACTCGTCAATTGTTAGAAATGTTGGCTGTAATACCCAAAGGGCACCCCGCCAAGCAAAACCTACCGAAGCAGACAACGAAAACAAAATTAAGTTGTTGACAGATTGA 1437 0.4001 MDPYSEDLPHYIHINQNEFYMRRHKKQKEEDIAICECRYDEDDPDSACGDGCLNVLTSTECTPGHCPCDTLCKNQKFQKCEYAKTKLFKTEGRGWGLLADEEIKEGQFIIEYCGEVISCKEAKRRSHAYEIQGLKDAFIISLNASESIDASRKGSIARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDELTSNVDGQSEQSMAIVLKSEELSDSTVLDIQPLNSSIEIKDLGIGKMKTEIVSEDMKLYSQDTEEDLSQKNAMISRIRSNTAGRNYRIGPRSAKRSKAGGRFKKRIQKKIDAKYAASLLASKVAQEEILDYEKRKDDATEALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVRNVGCNTQRAPRQAKPTEADNENKIKLLTD* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0869 478 MobiDBLite consensus disorder prediction 456 478 - -
Tpr1g0869 478 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Tpr1g0869 478 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Tpr1g0869 478 Coils Coil 378 405 - -
Tpr1g0869 478 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Tpr1g0869 478 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 8 416 - -
Tpr1g0869 478 PANTHER SET DOMAIN PROTEINS 8 416 - -
Tpr1g0869 478 SUPERFAMILY SET domain 9 220 IPR046341 -
Tpr1g0869 478 MobiDBLite consensus disorder prediction 463 478 - -
Tpr1g0869 478 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
Tpr1g0869 478 SMART set_7 83 206 IPR001214 GO:0005515
Tpr1g0869 478 Pfam SET domain 94 200 IPR001214 GO:0005515
Tpr1g0869 478 Gene3D SET domain 2 235 IPR046341 -
Tpr1g0869 478 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0869 Tpr-Chr1 7384596 7395759 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0869 66 222 C2H2 Transcription Factor Family AT2G23740 34.444 1.31e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr1g0869 SET 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g0869 - - gmx:100804657 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0869 1 7384596 7395759 Tpr1g0869 1 7384596 7395759 ECH